Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D10
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.24
11_06_0610 - 25449085-25453284 33 0.41
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.3
05_07_0031 - 27183252-27183317,27183542-27184282 31 1.7
03_01_0515 - 3864796-3865425 30 2.2
07_03_0558 + 19461369-19462448 30 2.9
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 3.8
12_02_1174 - 26696869-26698191 29 6.7
08_01_0059 - 394001-394708 29 6.7
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 28 8.9
06_01_0486 - 3455030-3455770 28 8.9
04_04_0176 - 23329589-23331043 28 8.9
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719... 28 8.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.5 bits (73), Expect = 0.24
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 652 PPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
PPP +G P KG PP P PPP PP
Sbjct: 338 PPPPKGPP-PPPPAKGPPPPPPPKGPSPPPPPPP 370
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 503 GGXRXPPPXGGXSGXPLKPGXP 568
GG PPP GG S P PG P
Sbjct: 375 GGPPPPPPKGGASRPPAAPGVP 396
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.7 bits (71), Expect = 0.41
Identities = 21/85 (24%), Positives = 22/85 (25%)
Frame = +1
Query: 517 SPPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNPXXXXK 696
SPP P +G P K P P P PP G P
Sbjct: 503 SPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTAS 562
Query: 697 GGEXPPEXXHPRXPPPXPPXAXYCP 771
P H PP P A P
Sbjct: 563 HSPPPVPEGHTPSPPKSGPPAGESP 587
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +2
Query: 518 PPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPPPXE 667
PPP G S P P P P P +PP + PPP E
Sbjct: 96 PPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPPPRE 145
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P PPP + G PP P PPP PP
Sbjct: 27 PYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPP 63
>05_07_0031 - 27183252-27183317,27183542-27184282
Length = 268
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P PPP P + PE P PPP PP
Sbjct: 122 PPPPPPPTTTTKPESLPAEADSEPELKAPPPPPPPPP 158
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +1
Query: 595 PLXAIXPKXXXXXXIXPXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P P + P PPP +P PP P PPP PP
Sbjct: 55 PSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107
>07_03_0558 + 19461369-19462448
Length = 359
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 770 GQXXAXGGFGGGXRGXLXSGGXSPPFXLXXGFXXPLKGGGXFG 642
G GGFGGG L GG F G + GGG FG
Sbjct: 203 GGVGGGGGFGGGGGSGL-GGGQGGGFGAGGGAGGGIGGGGGFG 244
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = -3
Query: 770 GQXXAXGGFGGGXRGXLXSGGXSPPFXLXXGFXXPLKGGGXFGXMXXXXXXFGXMAXRGP 591
GQ G FG G G S S F GF GGG F A G
Sbjct: 1626 GQSRQLGSFGAGGFGGFASASASGGFSSNSGFAGGATGGGFSAAAAPAGGGFAAAATGGG 1685
Query: 590 F 588
F
Sbjct: 1686 F 1686
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 652 PPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPPXAXYCPN 774
PPP +P PPE P+ PPP PP P+
Sbjct: 274 PPPPEDYWSPTAVT-----PPEPTKPKPPPPSPPPPPQQPS 309
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXP 750
P PPP P + PP P PPP P
Sbjct: 160 PPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P PPP R + PP P PPP PP
Sbjct: 190 PPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPP 226
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 643 PXXPPPXRGXXNP-XXXXKGGEXPPEXXHPRXPPPXPPXAXYCP 771
P PPP R P PP P PPP P Y P
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAP 45
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +3
Query: 393 FXXQVXKSXQGAGXGXXRXGXSSGXSGQGXA---XXGXPXGEXGXPPXXG 533
F Q QG G G R G G G+G G P G G P G
Sbjct: 138 FLPQPKGQSQGGGRGGGRGGGRGGFRGRGGGGFRGRGAPRGRGGPPRGGG 187
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPPXAXYCP 771
P PPP P PP P PPP PP CP
Sbjct: 122 PYVPPPTPPSPPPYVPPPTPPSPP----PYVPPPSPPATKTCP 160
>04_04_0176 - 23329589-23331043
Length = 484
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 637 IXPXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPPXAXYCP 771
+ P PPP R P K PP+ + P P P A P
Sbjct: 72 LSPSPPPPPRRGPLPDPTAKAEPEPPKPTPQQQPQPLLPAAKPAP 116
>01_06_1214 +
35470688-35471340,35471617-35471701,35471750-35471906,
35472086-35472189
Length = 332
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +1
Query: 637 IXPXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
+ P P P NP + G P PPP PP
Sbjct: 7 LLPLKPSPPTTGLNPIHGRRHGHHPSRLLASSAPPPPPP 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,442,449
Number of Sequences: 37544
Number of extensions: 180411
Number of successful extensions: 1675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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