Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D10
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.5
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 31 1.5
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 31 1.5
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 2.0
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 30 2.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 29 4.6
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 4.6
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 8.0
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 8.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 8.0
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 8.0
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVNGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCDPI 140
Query: 650 XPPPXE 667
PPP +
Sbjct: 141 TPPPCQ 146
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVNGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCDPI 140
Query: 650 XPPPXE 667
PPP +
Sbjct: 141 TPPPCQ 146
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P PP G P GG PP PPP PP
Sbjct: 84 PPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVTGGAASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCEPI 140
Query: 650 XPPP 661
PPP
Sbjct: 141 TPPP 144
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCEPI 140
Query: 650 XPPP 661
PPP
Sbjct: 141 TPPP 144
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCEPI 140
Query: 650 XPPP 661
PPP
Sbjct: 141 TPPP 144
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCEPI 140
Query: 650 XPPP 661
PPP
Sbjct: 141 TPPP 144
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P RPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGRPPQQPCEPI 140
Query: 650 XPPP 661
PPP
Sbjct: 141 TPPP 144
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 506 GXRXPPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPP 658
G + P G G P KPG P KAP P + PP PP
Sbjct: 106 GPQGAPGAPGKPGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPP 156
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 506 GXRXPPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPP 658
G + P G G P KPG P KAP P + PP PP
Sbjct: 106 GPQGAPGAPGKPGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPP 156
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 506 GXRXPPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPP 658
G + PP G +G P KPG P + P P PP PP
Sbjct: 93 GAQGPPGTPGRAGRPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPP 143
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 652 PPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
PPP G P G P P PPP PP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 322
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 643 PXXPPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
P PPP R P + P PR PP PP
Sbjct: 152 PRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPP 188
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 652 PPPXRGXXNPXXXXKGGEXPPEXXHPRXPPPXPP 753
PPP G P G P P PPP PP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 332
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 506 GXRXPPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPP 658
G + PP G +G P KPG P + P P PP PP
Sbjct: 95 GAQGPPGTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPP 145
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/84 (29%), Positives = 25/84 (29%)
Frame = +1
Query: 502 GGKXVSPPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNP 681
GG PP G P G P GP P P PPP G P
Sbjct: 701 GGSSALPPITGG--PPPPPGLPPITG----GPPPPPPPGGLPPITGGPPPPPPPGGLP-P 753
Query: 682 XXXXKGGEXPPEXXHPRXPPPXPP 753
PP P PPP PP
Sbjct: 754 ISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +1
Query: 520 PPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNPXXXXKG 699
PP G P G P GP P P PPP G P
Sbjct: 720 PPITGGPPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP-- 774
Query: 700 GEXPPEXXHPRXPPPXPPXAXYCP 771
PP PPP PP + P
Sbjct: 775 ---PPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/84 (29%), Positives = 25/84 (29%)
Frame = +1
Query: 502 GGKXVSPPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNP 681
GG PP G P G P GP P P PPP G P
Sbjct: 701 GGSSALPPITGG--PPPPPGLPPITG----GPPPPPPPGGLPPITGGPPPPPPPGGLP-P 753
Query: 682 XXXXKGGEXPPEXXHPRXPPPXPP 753
PP P PPP PP
Sbjct: 754 ISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +1
Query: 520 PPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNPXXXXKG 699
PP G P G P GP P P PPP G P
Sbjct: 720 PPITGGPPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP-- 774
Query: 700 GEXPPEXXHPRXPPPXPPXAXYCP 771
PP PPP PP + P
Sbjct: 775 ---PPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/84 (29%), Positives = 25/84 (29%)
Frame = +1
Query: 502 GGKXVSPPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNP 681
GG PP G P G P GP P P PPP G P
Sbjct: 284 GGSSALPPITGG--PPPPPGLPPITG----GPPPPPPPGGLPPITGGPPPPPPPGGLP-P 336
Query: 682 XXXXKGGEXPPEXXHPRXPPPXPP 753
PP P PPP PP
Sbjct: 337 ISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +1
Query: 520 PPXRGXLRXXPETGXXPXXXXXXKGPLXAIXPKXXXXXXIXPXXPPPXRGXXNPXXXXKG 699
PP G P G P GP P P PPP G P
Sbjct: 303 PPITGGPPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP-- 357
Query: 700 GEXPPEXXHPRXPPPXPPXAXYCP 771
PP PPP PP + P
Sbjct: 358 ---PPPGGFKGGPPPPPPPGMFAP 378
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXP--PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQX 649
G G +S GG P G +G P KPG P + AP P PP
Sbjct: 52 GVNGGSASTGGCDACCLPGAAGPAGTPGKPGRPGKPG----APGLPGNPGHPPQQPCDPI 107
Query: 650 XPPPXE 667
PPP +
Sbjct: 108 TPPPCQ 113
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 420 QGAGXGXXRXGXSSGXSGQGXAXXGXPXGEXGXPPXXGXTPXXP*NRGXP 569
QG + G S G QG A P G+ G P G P N G P
Sbjct: 214 QGPSGAPGQPGQSGGQGQQGPAGPAGPDGQPGQPGQDGQA-GAPGNDGAP 262
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 521 PPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXPPP 661
P G +G P KPG P + AP P RPP PPP
Sbjct: 107 PGAAGPAGTPGKPGRPGKAG----APGLPGNPGRPPQQPCEPITPPP 149
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/104 (26%), Positives = 32/104 (30%)
Frame = -3
Query: 770 GQXXAXGGFGGGXRGXLXSGGXSPPFXLXXGFXXPLKGGGXFGXMXXXXXXFGXMAXRGP 591
G GFGGG G GG + GF GG FG FG G
Sbjct: 26 GGNNGGSGFGGGKNGGTGFGGGNTG---GSGFGGGNTGGSGFGGGKAGGSGFGGGNTCGS 82
Query: 590 FXXXXXXGXSPVSGXXRSXPLXGGXTXFPPRXTXXRXSLXXGTG 459
G SP G GG T + + S G+G
Sbjct: 83 GFGGGSTGGSPYGGASSG---FGGSTATSGFGSGEKSSAFGGSG 123
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/104 (26%), Positives = 32/104 (30%)
Frame = -3
Query: 770 GQXXAXGGFGGGXRGXLXSGGXSPPFXLXXGFXXPLKGGGXFGXMXXXXXXFGXMAXRGP 591
G GFGGG G GG + GF GG FG FG G
Sbjct: 26 GGNNGGSGFGGGKNGGTGFGGGNTG---GSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGS 82
Query: 590 FXXXXXXGXSPVSGXXRSXPLXGGXTXFPPRXTXXRXSLXXGTG 459
G SP G GG T + + S G+G
Sbjct: 83 GFGGGSTGGSPYGGASSG---FGGSTATSGFGSGEKSSAFGGSG 123
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = +2
Query: 476 GTXGTRSSXGGXRXPPPXGGXSGXPLKPGXPXEXXXXQKAP*XP*XQXRPPXXXSSQXXP 655
G G S G P P G SG P KPG P A P RPP P
Sbjct: 98 GGSGGGGSCSGCCLPGP-AGPSGAPGKPGRPGRPG----AGGLPGNPGRPPAQPCHPITP 152
Query: 656 PP 661
PP
Sbjct: 153 PP 154
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/104 (26%), Positives = 32/104 (30%)
Frame = -3
Query: 770 GQXXAXGGFGGGXRGXLXSGGXSPPFXLXXGFXXPLKGGGXFGXMXXXXXXFGXMAXRGP 591
G GFGGG G GG + GF GG FG FG G
Sbjct: 26 GGNNGGSGFGGGKNGGTGFGGGNTG---GSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGS 82
Query: 590 FXXXXXXGXSPVSGXXRSXPLXGGXTXFPPRXTXXRXSLXXGTG 459
G SP G GG T + + S G+G
Sbjct: 83 GFGGGSTGGSPYGGASSG---FGGSTATSGFGSGEKSSAFGGSG 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,285,088
Number of Sequences: 27780
Number of extensions: 118076
Number of successful extensions: 1083
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -