Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D09
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   114   9e-26
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    30   1.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  114 bits (274), Expect = 9e-26
 Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
 Frame = +2

Query: 425 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 601
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 602 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 781
            ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 782 EAVIKASEPXP 814
             ++ A +  P
Sbjct: 181 APILAAIKKHP 191



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYK 235
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 356 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 490
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -3

Query: 115 GSRLGHRFRLCWS----HIQTGFKKKAK 44
           GSR GH   LCW+    H Q G+K  A+
Sbjct: 379 GSRAGHNIALCWAAMLYHAQEGYKANAR 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,193
Number of Sequences: 27780
Number of extensions: 388751
Number of successful extensions: 1023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)