Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D08
(925 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 57 7e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 54 4e-06
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 53 9e-06
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 53 1e-05
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 53 1e-05
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 53 1e-05
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 50 1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 44 0.004
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 44 0.004
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.006
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 41 0.051
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 38 0.27
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.48
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 36 1.5
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 35 2.6
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 4.5
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 56.8 bits (131), Expect = 7e-07
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +2
Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKL 229
P W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22 PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 54.4 bits (125), Expect = 4e-06
Identities = 27/42 (64%), Positives = 28/42 (66%)
Frame = +1
Query: 586 CINESANARGXAVCVLGALPXPRSLTRCARSFGCGXRVSAHS 711
CI + A AR AV VL ALP RS TRC RS GCG VSAHS
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHS 307
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 53.2 bits (122), Expect = 9e-06
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
P W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 50 PIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 125 KS*NKTDPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
K+ + P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 56 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 125 KS*NKTDPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
K+ + P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 94 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 125 KS*NKTDPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
K+ + P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 100 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 49.6 bits (113), Expect = 1e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 48.8 bits (111), Expect = 2e-04
Identities = 35/81 (43%), Positives = 43/81 (53%)
Frame = +1
Query: 622 VCVLGALPXPRSLTRCARSFGCGXRVSAHSRXVIRLSTESGDNAGKNX*AKGQQKARKP* 801
+C G +P PRSLTR ARSFGCG R RL+ G+ +++ R P
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGER--------YRLTDGDGNFLEDTRKTLSKEEIR-PR 80
Query: 802 KGRVXWRFSIGSAPLTXIKKS 864
+ RFSIGSAPLT I KS
Sbjct: 81 RS----RFSIGSAPLTSIAKS 97
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 91 PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 59 PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.0 bits (99), Expect = 0.006
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 697 VSAHSRXVIRLSTESGDNAGKN 762
VSAHS+ VIRLSTESGDNAGKN
Sbjct: 37 VSAHSKAVIRLSTESGDNAGKN 58
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 40.7 bits (91), Expect = 0.051
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -1
Query: 748 YPLILWITVLPPLSELIP 695
YPLILWITVLPPLSEL P
Sbjct: 32 YPLILWITVLPPLSELTP 49
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 38.3 bits (85), Expect = 0.27
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 584 SALMNRPTRGXRRFAYW 634
+ALMNRPTRG RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.5 bits (83), Expect = 0.48
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 638 APNTQTAXPRALADSLMQ 585
APNTQTA PRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 35.9 bits (79), Expect = 1.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 125 KS*NKTDPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
K+ + P WV ++T IR+N RR+WRR LK+
Sbjct: 15 KALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 35.1 bits (77), Expect = 2.6
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +2
Query: 389 DPXMIXYIDXFGQTTTXMQ 445
DP MI YID FGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 4.5
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 191 YNAKRRHWRRTKL 229
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,114,218
Number of Sequences: 1657284
Number of extensions: 8114260
Number of successful extensions: 15599
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15598
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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