Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D08
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    55   1e-08
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   6.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   6.5  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 125 KS*NKTDPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           K+  +  P   W+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 15  KAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 247 FTSLQLELCPSPVTPLSVISNSVSCAHPYP 158
           ++S+ L    +P TP S  +N V CA P P
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSP 361


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 220 PSPVTPLSVISNSVSCAHPYPXEEWVCFVS 131
           P+P +P SVISN  S        EW    S
Sbjct: 366 PAPYSPTSVISNHSSTGKSLVISEWAYLAS 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,534
Number of Sequences: 5004
Number of extensions: 34184
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)