Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D08
         (925 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39 pro...    56   2e-07
D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39 pro...    56   2e-07
BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39 p...    56   2e-07
BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39 p...    56   2e-07
AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39 p...    56   2e-07
AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39 v...    54   6e-07
L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39 pro...    50   2e-05
BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-l...    50   2e-05
AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2...    50   2e-05
AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-l...    50   2e-05

>U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39
           variant protein.
          Length = 70

 Score = 54.4 bits (125), Expect = 6e-07
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 41  PIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70


>L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 49.6 bits (113), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 49.6 bits (113), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2
           protein.
          Length = 51

 Score = 49.6 bits (113), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 49.6 bits (113), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 146 PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 235
           P   W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,037,885
Number of Sequences: 237096
Number of extensions: 1258933
Number of successful extensions: 2394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)