Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D08
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   2.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   2.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 843 GGGAYGKTPXNXAFLRFPGLLLXFCSXV 760
           G G  GK P N  F R  G    FC  V
Sbjct: 30  GLGGRGKCPSNEIFSRCDGRCQRFCPNV 57


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 843 GGGAYGKTPXNXAFLRFPGLLLXFCSXV 760
           G G  GK P N  F R  G    FC  V
Sbjct: 30  GLGGRGKCPSNEIFSRCDGRCQRFCPNV 57


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 843 GGGAYGKTPXNXAFLRF 793
           G   YG  P N AF RF
Sbjct: 68  GASGYGFVPPNQAFYRF 84


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 247 FTSLQLELCPSPVTPLSVISNSVSCAHPYPXEEWVCFVSAFWPICAL 107
           F  +   +  S V+ + +++     A  +   EWV  V  +W  C L
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVFLYWLPCIL 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,652
Number of Sequences: 438
Number of extensions: 2485
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)