Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D07
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz...    60   5e-10
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.7  

>SPCC550.06c |hsp10||mitochondrial heat shock protein
           Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = +3

Query: 189 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENG 350
           + K +VPLLDR+L++R +A TKTA GI +PEK+  K+  G V++VG G   + G
Sbjct: 7   SAKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEG 60



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = +1

Query: 370 VSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 486
           V+VGD+VLLP YGG+ + +   E+EY L+R+ ++LA I+
Sbjct: 67  VAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = +1

Query: 406  GGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANETLIWSCIFCE 585
            GG+  S  N   +Y L+RE     K+E+ MM      SN    V+ C N   ++SC+F +
Sbjct: 857  GGSSNSA-NISSQYRLWRE-----KLESEMM---RVSSNDDYQVLVCENLVGLFSCVFVK 907

Query: 586  VLILSQLQYL 615
              + S+++ L
Sbjct: 908  NKLQSKIRML 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,803
Number of Sequences: 5004
Number of extensions: 40994
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)