Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D07
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494...    57   2e-08
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341...    57   2e-08
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845...    56   5e-08
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061     55   7e-08
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413     37   0.025
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341...    32   0.53 
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    29   4.9  
06_01_0666 - 4873797-4874057,4874327-4874455                           29   6.5  

>06_01_0676 +
           4945361-4945531,4945632-4945811,4947145-4947300,
           4947460-4947537,4964041-4964214
          Length = 252

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 192 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPXS 368
           VK + PL DRVLIK AEA  KTAGG+++ E  + K   G VVAVGPG   + G   P S
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLS 214



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 27/44 (61%), Positives = 30/44 (68%)
 Frame = +3

Query: 201 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 332
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVAVG G
Sbjct: 61  LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 104


>02_05_0964 -
           33133516-33133689,33133780-33133857,33133997-33134152,
           33134685-33134864,33135516-33135695
          Length = 255

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/58 (53%), Positives = 36/58 (62%)
 Frame = +3

Query: 195 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPXS 368
           K + PL DRVLIK AEA  KT GG+++ E  + K   G VVAVGPG   E G  IP S
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLS 217



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +3

Query: 201 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 332
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVA+G G
Sbjct: 64  LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG 107


>09_04_0259 -
           16182190-16182360,16183185-16183262,16184431-16184586,
           16184913-16185092,16185875-16186027
          Length = 245

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 192 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPXS 368
           VK L PL DRVLIK AEA  KTAGG+++ +  + K   G V AVGPG   E+G   P S
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDGSRKPLS 208



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/54 (50%), Positives = 32/54 (59%)
 Frame = +3

Query: 207 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPXS 368
           PL DRVL+K   +  KT GGI++P   QSK   G+VVAVG G R    D I  S
Sbjct: 57  PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVGEG-RSMGSDSIEIS 109


>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
          Length = 98

 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 26/56 (46%), Positives = 42/56 (75%)
 Frame = +3

Query: 195 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIP 362
           +RL+P L+RVL+++     K+AGGI++PE ++ ++  G+VVAVGPG R ++G  IP
Sbjct: 3   RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDKDGKLIP 57



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 24/41 (58%), Positives = 27/41 (65%)
 Frame = +1

Query: 361 PXQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 483
           P  +  GD VLLPEYGG +V L   EKEY LFRE DIL  +
Sbjct: 57  PVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96


>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
          Length = 126

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +1

Query: 361 PXQVSVGDKVLLPEYGGTKVSLENDEKEY 447
           P  +  GD VLLPEYGGT+V L   EKEY
Sbjct: 96  PVSLKEGDTVLLPEYGGTEVKLA--EKEY 122



 Score = 35.5 bits (78), Expect = 0.057
 Identities = 14/31 (45%), Positives = 24/31 (77%)
 Frame = +3

Query: 189 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPE 281
           A +RL+P ++RVL+++     K+AGGI++PE
Sbjct: 2   AARRLIPSMNRVLVEKLLQPNKSAGGILLPE 32


>10_08_0968 +
           21933627-21933785,21933893-21933943,21934094-21934129,
           21935011-21935076,21935163-21935210,21936424-21936453,
           21936651-21936719
          Length = 152

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 367 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 486
           +V  G KVL  +    +V L  DEK  H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 170 KNRNGQCSKTIGSSSGPCP 226
           K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253


>06_01_0666 - 4873797-4874057,4874327-4874455
          Length = 129

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 RHCHPREGSIQGFTRRSSSGRSWSPKRKWRLHPRFK 370
           RHC  +   ++   RR S G SW  +R W + P F+
Sbjct: 45  RHCRRQRTWVR--RRRRSGGGSWCRRRTWLVMPVFR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,182
Number of Sequences: 37544
Number of extensions: 251715
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)