Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D07
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    67   2e-11
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = +3

Query: 183 ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 359
           +N +K   PL DRVL++R  A TKT GGI++PEK+Q KVL   VV+ G G R E G+ +
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELV 68



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +1

Query: 370 VSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 474
           V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 72  VKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 486 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 391
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,334
Number of Sequences: 27780
Number of extensions: 228575
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)