Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D06
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    65   1e-11
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    53   5e-08
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    51   3e-07
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.41 
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   1.2  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    26   8.8  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 46/162 (28%), Positives = 80/162 (49%)
 Frame = +1

Query: 271 GCTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSL 450
           G T  T  PT+   +L   R    + L  +R   +  +P +P ++  ++    A  +++ 
Sbjct: 250 GATWYTAVPTIHQILL---RTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRAPVLEA- 305

Query: 451 YGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRGYNN 630
           Y +TE +  +  +N    +     +VG     VE+K+++++G  +P    GE+ VRG N 
Sbjct: 306 YAMTEASHQM-TTNPLPPLVHKPHSVGK-PFGVELKILDQKGNEMPQGKEGEICVRGINV 363

Query: 631 MICYWNEPEKTRQTLDKDGWLKTGDKFTISKDGYGRIVGRIK 756
              Y N P   + +  KD + +TGD+  + KDGY  I GRIK
Sbjct: 364 TKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIK 405



 Score = 33.1 bits (72), Expect = 0.058
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 756 DIIVRGXENIAPKEIXXLLNTHXDVEKSQVVGVSDKXVGXXLCAVV 893
           +++ RG E I+P EI  +L  H DV ++    V D+  G  + A +
Sbjct: 406 ELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAI 451


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
 Frame = +1

Query: 451 YGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVN--EQGEIVPFETP-GELVVRG 621
           YGLTET A  F  +  +   + A TVG+    +E K+V+  + G       P GE+ +RG
Sbjct: 439 YGLTETCAGSFVLSP-EQWHLYANTVGFPIPSIEFKLVDIPDLGYYTDSSPPRGEVWIRG 497

Query: 622 YNNMICYWNEPEKTRQTLDKDGWLKTGDKFTISKDGYGRIVGRIK 756
                 Y N PE  +    +DGW KTGD   I+K    R++ R K
Sbjct: 498 PAVCNGYLNRPEDNKAAFTEDGWFKTGDVGEIAKGNTLRLIDRKK 542


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
 Frame = +1

Query: 283 ITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLT 462
           + G+  +   + ++IR+ G      LR  ++ G+  SP   R +   L    +   YGLT
Sbjct: 381 LPGSCVLDTAVFNKIRSMGTG--GRLRYTLSGGSALSPDTKRFLSIVLCPMLIG--YGLT 436

Query: 463 ETTACIFQSNQGD-SIDVVAETVGYIQDHVEVKVVN-EQGEIVPFETP--GELVVRGYNN 630
           E +A     N    ++D   ++ G +    E+K+V+ E+G       P  GE+ +RG + 
Sbjct: 437 EISAAAMVQNPACFNLD---DSAGSLLPCTEMKLVDCEEGNYNSHGHPPRGEIWLRGPSL 493

Query: 631 MICYWNEPEKTRQTLDKDGWLKTGDKFTISKDGYGRIVGRIK 756
              Y N  ++ +++   DGW +TGD   ++ +G  RI+ R K
Sbjct: 494 TRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKK 535


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 332 PKVRRCFLNSGWRSPPERPAAPN*LEIYKHISMLNQLKVCTV*LRQQLAY 481
           P   RC L++   SPP+ P  PN L +Y     LN  +V  + L  Q ++
Sbjct: 387 PNTERCILSAFICSPPQLP-LPNPLRMYLPCPSLNSTEVSVITLAPQHSF 435


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 756 DIIVRGXENIAPKEIXXLLNTHXDVEKSQVVGVSDKXVGXXLCAVVKLR 902
           D++      ++  EI   L +H  V +S VVGV D+  G  + A + L+
Sbjct: 528 DVVNISGHRLSTAEIEAALLSHDAVAESAVVGVHDELTGQAVNAFILLK 576


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 478 IFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRG-YNNMICYWNE 651
           I+++ + D  D +A    + QD   VKVV       P E   +L+V G Y+N IC+W +
Sbjct: 404 IWEATEDDEFDCLAVLQEHTQD---VKVVTWH----PTE---DLLVSGSYDNSICFWRD 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,988
Number of Sequences: 5004
Number of extensions: 65907
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)