Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D06
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.75 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   9.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
 Frame = +1

Query: 439 VKSLYGLTETTACIFQSNQGDSIDVVAE---TVGYIQDHVEVKVVNEQGEIVPFETPGEL 609
           V  + GL     C+F    GDS++  +    T   +Q H+              +  GE+
Sbjct: 527 VAGIVGLKMPRYCLF----GDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKERGEI 582

Query: 610 VVRGYNNMICYWNEPEKTRQTLDK 681
            V+G   M  YW E  + R +  K
Sbjct: 583 EVKGKGIMKTYWLEKREHRSSSTK 606


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 524 VSATTSILSPWLDWN 480
           +  T+S ++ WL+WN
Sbjct: 313 ILVTSSFITFWLEWN 327


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 524 VSATTSILSPWLDWN 480
           +  T+S ++ WL+WN
Sbjct: 282 ILVTSSFITFWLEWN 296


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 524 VSATTSILSPWLDWN 480
           +  T+S ++ WL+WN
Sbjct: 333 ILVTSSFITFWLEWN 347


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 524 VSATTSILSPWLDWN 480
           +  T+S ++ WL+WN
Sbjct: 282 ILVTSSFITFWLEWN 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,710
Number of Sequences: 438
Number of extensions: 4977
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)