Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D05
         (961 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RHD2 Cluster: Chromosome 3 SCAF15050, whole genome sh...    33   8.2  

>UniRef50_Q4RHD2 Cluster: Chromosome 3 SCAF15050, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF15050, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1378

 Score = 33.5 bits (73), Expect = 8.2
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 177 TSNESCCV-ASSNFTHRSFSICAPFDPIAQRIHKRTIRRPPTRLDSNLK 34
           TS ES C  AS +  H S+S CAP    AQR    T R   T LD+  K
Sbjct: 496 TSTESLCSNASMDSRHSSYSYCAPGYHTAQRPSFTTARVEKTLLDARRK 544


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,169,118
Number of Sequences: 1657284
Number of extensions: 9423575
Number of successful extensions: 25645
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25636
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88998789286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)