Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D05
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   1.3  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   5.2  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   6.9  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 104 SKGAQIEKDRCVKLLDATQQDSFEVV 181
           S+ A + +D+C++L D+TQ D  E++
Sbjct: 75  SRMATVSEDKCLRLWDSTQPDKIELL 100


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 225 VAHRAHRVRASMSAMTTSNESCCVASSNF 139
           +AHR HR++  ++A        C+ ++NF
Sbjct: 408 LAHRPHRLKIDLNAKQWGATGVCILNANF 436


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 TKFSKKYVISSVVHNDNIGNILLADCRYYNNDT 504
           +KFS KYV +  + ND+  N       YY+ DT
Sbjct: 3   SKFSSKYVDTEAISNDD-DNPFATAKSYYSKDT 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,262
Number of Sequences: 5004
Number of extensions: 40400
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)