Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D04
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.23 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.52 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   4.9  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    26   6.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   8.5  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 564 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 391
           ALV+ P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -1

Query: 623 APSNXMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 444
           +PS+    T+TSPS+         S   +S   +  S++  +  S S+S+S  S  + S 
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197

Query: 443 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 330
              + SS+  + +     ++H S+      S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -3

Query: 591 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 412
           +P  +E ++A + Q  ++  +    QR ++       Q++    +G+  HPA R    PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 158 VSNVWACLAVLYYGSKSPNNLLTGV 84
           V + W C   +Y+   SP  L TG+
Sbjct: 158 VESAWRCAEAIYFPPSSPYTLSTGI 182


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 178  MAVPPIYNPVI---PVRAPHPGRHVPRXACSASRXRVPPGA 291
            +A PP+  P +   PV AP     VP+ + +A    VP GA
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 463 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 585
           ETF++ V+C+P AL V  +  H     HRL  +  +H +++
Sbjct: 72  ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 585 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 454
           VHR+++ + L+ QP+  L   +     LE  +L +   LEG+  G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,384
Number of Sequences: 5004
Number of extensions: 52733
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)