Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D04
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 33 0.42
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 31 0.96
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 31 0.96
08_02_1037 - 23851750-23852132,23852622-23852784 31 1.7
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 30 2.9
12_01_0317 + 2417147-2417587,2417622-2418134 29 3.9
10_08_0631 - 19435796-19436452,19437237-19438130 29 3.9
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 29 3.9
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 29 3.9
03_05_0437 - 24293236-24294120 29 5.1
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 28 9.0
09_04_0373 - 17037945-17040641 28 9.0
>09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 32.7 bits (71), Expect = 0.42
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = -3
Query: 555 LQPVRELAEVHAVQRHLEGARLAQHQRL--EGLPVGVQRHPARRLLGAPAHVAEVVPHDA 382
LQP +L + H +Q+ L+ +L QH +L +GLP+ Q+ L +
Sbjct: 678 LQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQ 737
Query: 381 HLHEAEVEVQ-RDVVPRVRVGSALQVDREPLCAGRHSXPGCGACXPGYMPPGMG 223
+ + + + Q + + + + LQ ++P G G G P + GMG
Sbjct: 738 QIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVG----TGMGQQQPQMVGTGMG 787
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 521 PFSATLRARGSHSTSASK--VSPLACSGIPPAVSSAPQLMLLRWFR 390
P S+ + A GS +T A + S SGIPPA S P + L W R
Sbjct: 540 PSSSAVTAGGSTATIAGEGSTSDSGLSGIPPAASPPPPPLPLSWRR 585
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 31.5 bits (68), Expect = 0.96
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 524 TPFSATLRARGSHSTSASKVSPLACSGIPPAVSSAPQL 411
T + L +G H+ +A++ + L G PP SSAPQ+
Sbjct: 309 TSVISCLPEQGKHAAAAARPTALTLGGAPPHESSAPQI 346
>08_02_1037 - 23851750-23852132,23852622-23852784
Length = 181
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -1
Query: 626 CA-PSNXMNCTSTSPSTV---RCEMRWY-CS---RCGNSQKCTPFSATLRARGSHSTSAS 471
CA SN ++ TSTSP+T+ M +Y C+ C K + GS S +
Sbjct: 75 CAVASNSISSTSTSPATLDLAAAGMHYYICTISGHCAGGMKLAINVGSGSGSGSGSGTPP 134
Query: 470 KVSPLACSGIPPAVSSAP 417
+P SG PPA S+P
Sbjct: 135 STTP-GSSGTPPATPSSP 151
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 546 VRELAEVHAVQRHL--EGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 391
V E + ++ + R L GA H+ L L +R+ + LG P H+A V P
Sbjct: 460 VEEKSPINVLYRDLVLSGAAFGAHRWLAALQRACERYASLVALGVPHHIAGVTP 513
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 596 STSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSA--SKVSPLACSGIPPAVSS 423
S S + +R + S G+ CT S+T RGS + A S +S A + A SS
Sbjct: 3 SASSLLLPSSVRDFASCIGDGAACTAPSSTRTRRGSAAVQAQPSTLSVTASYRVALASSS 62
Query: 422 APQLML-LRW 396
+P L L L W
Sbjct: 63 SPPLQLRLTW 72
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 473 SKVSPLACSGIPPAVSSAPQLMLLRWFRTTHISTKRKLRCS 351
SK L CS IP +S L RTT I TK+ ++C+
Sbjct: 476 SKRWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQCA 516
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 29.5 bits (63), Expect = 3.9
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Frame = -3
Query: 582 HREVRDALVLQP--VRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAH 409
HRE + AL + + L+E + +++ ++ L+ V + + R +L AP H
Sbjct: 145 HREAKAALAVTKAEIGRLSEENKRLKNMLSNVTTKYNSLQMQFVTLMQQ-RRSVLAAPIH 203
Query: 408 VAEVVPHDAHLHEAEVEVQRDVVPR--VRVGSA-LQVDRE----------PLCAGRHSXP 268
E++ + E + Q+ ++PR + +GSA LQ D E +CA S P
Sbjct: 204 QQELLDPEKKEQEGSQQQQQQLIPRQFISLGSASLQPDVEAPHSVVVVGGDVCAPSSSNP 263
Query: 267 GCGACXPGYMPPGMGCTHXYHRVVY 193
A P MP H +H ++
Sbjct: 264 --DAAVPAMMPLPHFDHHNHHHPIH 286
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 440 PPAVSSAPQLMLLRWFRTTHISTKRKL 360
P V P LML WFR +IST R+L
Sbjct: 1105 PSVVLVVPLLMLNLWFRKYYISTSREL 1131
>03_05_0437 - 24293236-24294120
Length = 294
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 458 LACSGIPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGSVLGPHCRLIANLCAPGG 279
LA +PPA + +L RW R TH+ K S+ + + L HC +A L G
Sbjct: 131 LALPELPPADDARLPSLLPRWRRLTHLELDSK--PSSFPAVAAALALHCPDLAVLRVTSG 188
Query: 278 TL 273
++
Sbjct: 189 SV 190
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 548 RCGNSQKCTPFSATLRA-RGSH---STSASKVSPLACSGIPPAVSSAPQLMLLRWFRTTH 381
R G KC T ++ RG+ + + + +ACSG+PP V A ++ L + + T
Sbjct: 410 RIGEGFKCKYCKMTRKSGRGTRLKEHLAGRRHNVIACSGVPPKVRKAMRISLNKVKQRTK 469
Query: 380 ISTKRKLRCSAMSSRGSV 327
+ R+ + +++ V
Sbjct: 470 AAKNRRAKMKKPNTQNMV 487
>09_04_0373 - 17037945-17040641
Length = 898
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 578 VRCEMRWYCSRCGNSQKCT-P--FSATLRARGS--HSTSASKVSPLACSGIPPAVSSAPQ 414
++C YCS GN CT P F+A++ GS ++ SP AC + A
Sbjct: 293 LQCPSLGYCSPAGNGSTCTCPPLFAASVTVAGSCTPGDGSTLASPAACQNNDSSSGGASV 352
Query: 413 LMLLRWFRTTHISTK 369
+ T++ +TK
Sbjct: 353 SYIALKPLTSYFATK 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,420,281
Number of Sequences: 37544
Number of extensions: 490746
Number of successful extensions: 2082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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