Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D04
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 166 KRIKMAVPPIYNPVIPVRAPHP 231
           +R  +  PP  NPV PV +P P
Sbjct: 430 ERDPILTPPSSNPVSPVPSPDP 451


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 311 RLIANLCAPGGTLXLDAEHAXLGTCRPGWGARTGITGLYIG 189
           RL A++   GG    + E   LG C        GITGLY G
Sbjct: 142 RLAADVGKAGG----EREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 311 RLIANLCAPGGTLXLDAEHAXLGTCRPGWGARTGITGLYIG 189
           RL A++   GG    + E   LG C        GITGLY G
Sbjct: 142 RLAADVGKAGG----EREFTGLGNCLTKIFKADGITGLYRG 178


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 627 LRALEPDELHEHVPVHREVRDALVLQPVRELAEVHA 520
           L A +PD L          ++ALVL+ V+  AE HA
Sbjct: 325 LGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHA 360


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 494 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 393
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWF 118


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 494 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 393
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWF 118


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 RXRVPPGAQRFAINLQCGPNTD 333
           + RVPPG   +  N +C  + D
Sbjct: 462 KIRVPPGTPIYECNKRCNCDID 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,594
Number of Sequences: 438
Number of extensions: 4337
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)