Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   1e-25
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.6  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   4.9  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (268), Expect = 1e-25
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +3

Query: 114 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 293
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 294 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 392
           KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
 Frame = +1

Query: 394 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPA 570
           RRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEA 159

Query: 571 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA 696
            +  A+PITE+ KNF A+  L   R+ A+  G RA   K  A
Sbjct: 160 VEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRA 200


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 326  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 207
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 314 IHSS*N*GRRIEPSICPNDWNCCRSPLDATSLLNHCKSMFKE 439
           +H S N G  ++P +  N WN     +D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 493 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 606
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,625
Number of Sequences: 5004
Number of extensions: 57622
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)