Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_C23
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 112 3e-25
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 111 8e-25
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 30 2.3
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 5.2
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 6.9
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 29 6.9
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 6.9
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 9.1
10_08_0694 - 19929918-19930292,19930633-19930866 28 9.1
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 112 bits (270), Expect = 3e-25
Identities = 54/100 (54%), Positives = 66/100 (66%)
Frame = +3
Query: 93 MGKGXHXIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 272
M K + IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 273 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 392
T++Y+ K RAGRGFTL E++AAG+ FA TIGI+VD R
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 85.0 bits (201), Expect = 8e-17
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Frame = +1
Query: 394 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPA 570
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGE 160
Query: 571 PKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 693
+SV +T+D K FKAY LR R + +G R KR +A
Sbjct: 161 KRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 111 bits (267), Expect = 8e-25
Identities = 53/100 (53%), Positives = 66/100 (66%)
Frame = +3
Query: 93 MGKGXHXIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 272
M K + IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 273 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 392
T++Y+ K RAGRGFTL E++AAG+ +A TIGI+VD R
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 83.8 bits (198), Expect = 2e-16
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Frame = +1
Query: 394 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPA 570
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGE 160
Query: 571 PKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 693
+SV +T++ K FKAY LR R + VG R KR +A
Sbjct: 161 KRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRAAEA 202
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 431 TLICNDSTDLLRLTGIYSN-SNRSGKYWVQSCG 336
TLI N +T+L RL GIY N N SG ++ G
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTLIEGRG 199
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 385 IPVRRNKSV--ESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 537
+ VR N ++ +SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 172 LKVRNNLAIKIQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 387 DLQQFQSFGQILGSILRP 334
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 286 YRTVGHRTIGRNGP-AAGRGATALAFFILF---CFLRYRRAGWLNQVLTNLCQSLWKCPL 119
+R + + G G ++ RG T + FF++F F Y G+L +LT + W P
Sbjct: 207 FRALHEKEGGDGGKGSSSRGPTRMRFFLIFFFASFAYYALPGYLLPILTFFSWACWAWPH 266
Query: 118 GI 113
I
Sbjct: 267 SI 268
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 387 DLQQFQSFGQILGSILRP 334
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 169 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 339
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +1
Query: 391 VRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 564
+R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 53 LRSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,562
Number of Sequences: 37544
Number of extensions: 377230
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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