Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C23
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   109   3e-24
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    89   4e-18
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  109 bits (262), Expect = 3e-24
 Identities = 50/102 (49%), Positives = 66/102 (64%)
 Frame = +3

Query: 99  KGXHXIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 278
           +G   + N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 279 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR*TQQ 404
            RY+TK R GRGF+L+E++AAG++   ARTIGIAVD R T +
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNK 105



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
 Frame = +1

Query: 385 IPVRR-NKSVESLQINVQRIKEYRARLILFPKGKKV-LKGEANEEERKLATQLRGPLMPV 558
           + VRR NK+ E L+ N  R+KEY+A+LILFPK      KG+++ EE K+A QLRG ++P+
Sbjct: 98  VDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPL 157

Query: 559 QQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA 696
                    R +T+ E+  + ++ LR  R+  K  G R KR ++AA
Sbjct: 158 SHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRAREAA 203


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 39/84 (46%), Positives = 52/84 (61%)
 Frame = +3

Query: 99  KGXHXIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 278
           +G   + N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 279 VRYHTKVRAGRGFTLREIRAAGLN 350
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 463  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 618
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 463  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 618
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 463  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 618
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 624 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 493
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 235 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 146
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 624 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 493
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 472 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 648
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 649 IAKLVGIRAKRLK 687
             K  G + K  K
Sbjct: 103 SKKATGSKKKNKK 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,995
Number of Sequences: 27780
Number of extensions: 322870
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)