Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C22
         (936 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    25   5.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    25   5.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    25   5.5  

>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -2

Query: 656 PPTPXFXXXXPPXGXGSXXXSXVIPLXRWXXXLPPGXEXTPXPPXRTXXNSXXPDXGXXX 477
           PP P      PP G         +P+       PPG    P PP R+  +   PD G   
Sbjct: 166 PPAPAPGVYMPPPGMPGAYPPPRMPIGHG----PPGGPPMPGPPQRSRFDQ--PDGGDRW 219

Query: 476 APYTQXTSPRAXP 438
            P  +   PR  P
Sbjct: 220 GPPMRGV-PRTPP 231


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -2

Query: 656 PPTPXFXXXXPPXGXGSXXXSXVIPLXRWXXXLPPGXEXTPXPPXRTXXNSXXPDXGXXX 477
           PP P      PP G         +P+       PPG    P PP R+  +   PD G   
Sbjct: 166 PPAPAPGVYMPPPGMPGAYPPPRMPIGHG----PPGGPPMPGPPQRSRFDQ--PDGGDRW 219

Query: 476 APYTQXTSPRAXP 438
            P  +   PR  P
Sbjct: 220 GPPMRGV-PRTPP 231


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 25.4 bits (53), Expect(2) = 5.5
 Identities = 17/68 (25%), Positives = 22/68 (32%)
 Frame = -2

Query: 722 GXGPXXXIXXXPPRXXGXXXXTPPTPXFXXXXPPXGXGSXXXSXVIPLXRWXXXLPPGXE 543
           G  P       PP   G    +PP P      PP        +  +P  +     PP   
Sbjct: 291 GSPPPPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 347

Query: 542 XTPXPPXR 519
            +P PP R
Sbjct: 348 GSPPPPPR 355



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 902 PXPXXXNXXXWXXGSPPPXPXG 837
           P P   +      GSPPP P G
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTG 299


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 25.4 bits (53), Expect(2) = 5.5
 Identities = 17/68 (25%), Positives = 22/68 (32%)
 Frame = -2

Query: 722 GXGPXXXIXXXPPRXXGXXXXTPPTPXFXXXXPPXGXGSXXXSXVIPLXRWXXXLPPGXE 543
           G  P       PP   G    +PP P      PP        +  +P  +     PP   
Sbjct: 276 GSPPPPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 332

Query: 542 XTPXPPXR 519
            +P PP R
Sbjct: 333 GSPPPPPR 340



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 902 PXPXXXNXXXWXXGSPPPXPXG 837
           P P   +      GSPPP P G
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTG 284


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 25.4 bits (53), Expect(2) = 5.5
 Identities = 17/68 (25%), Positives = 22/68 (32%)
 Frame = -2

Query: 722 GXGPXXXIXXXPPRXXGXXXXTPPTPXFXXXXPPXGXGSXXXSXVIPLXRWXXXLPPGXE 543
           G  P       PP   G    +PP P      PP        +  +P  +     PP   
Sbjct: 270 GSPPPPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 326

Query: 542 XTPXPPXR 519
            +P PP R
Sbjct: 327 GSPPPPPR 334



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 902 PXPXXXNXXXWXXGSPPPXPXG 837
           P P   +      GSPPP P G
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTG 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,149
Number of Sequences: 27780
Number of extensions: 131217
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)