Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C21
         (926 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    27   0.21 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 770 GGPPGXXXPPPPGIPXPXFXPXE 838
           GGPP    PP  G+P P F P +
Sbjct: 66  GGPPSGGQPPQ-GMPYPRFPPYD 87



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 826 PPPGKPXXSXXXXPXXPPXGXGXVPPGGGXXP 921
           P PG    S       PP   G  PP GG  P
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGG-PPSGGQPP 75


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +1

Query: 745  PXPXKXXPRGPPRXXXPP-PPRXTXPPXPPPGKP 843
            P      P   P    PP PP    PP P   KP
Sbjct: 1360 PGSTTNYPEWQPTEWHPPIPPTSEKPPLPEELKP 1393


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 819 GXGXPGGGGXXXPGGP 772
           G G  G G    PGGP
Sbjct: 525 GGGGSGSGNNQPPGGP 540


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,942
Number of Sequences: 336
Number of extensions: 2516
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)