Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C21
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.008

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 691 PXXXKGGQXPXXN*KKPPPXPXKXXPRGPPRXXXPPPPRXTXPPXPPPGKP 843
           P   +  Q P      P P P +  P+ P R   PP P    PP  PPG P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQS-PQAPQRGS-PPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +1

Query: 706 GGQXPXXN*KKPPPXPXKXXPRGPPRXXXPPPPRXTXPPXPPPGKP 843
           GGQ P       PP P      G P     P    T P  P    P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 776 PPGXXXPPPPGIPXPXFXPXENXXXLP 856
           P G   PP  G P P      N   +P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMP 430



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/46 (23%), Positives = 13/46 (28%)
 Frame = +1

Query: 775 PPRXXXPPPPRXTXPPXPPPGKPXXSXXXXPXXPPXGXGXVPPGGG 912
           P     P  P+   PP P  G P       P         + P  G
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,748
Number of Sequences: 438
Number of extensions: 4979
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)