Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C18
         (1056 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    29   4.2  
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    29   4.2  

>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 809 GGGXFFFFXXPPPPXXXXXXXXGGGGGXXFFF 714
           GGG   F   PPPP        GGGG    +F
Sbjct: 271 GGGPSAFGGAPPPPSGSAMGGGGGGGATSAYF 302


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
           family, class qprotein 3 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 809 GGGXFFFFXXPPPPXXXXXXXXGGGGGXXFFF 714
           GGG   F   PPPP        GGGG    +F
Sbjct: 165 GGGPSAFGGAPPPPSGSAMGGGGGGGATSAYF 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,463
Number of Sequences: 27780
Number of extensions: 209944
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)