Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C17
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.95 
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   2.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    27   3.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   5.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   8.8  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   8.8  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 122 LWQAGFSRFVFTEDLHIIILSQEENKIICRVLDLQRV--VCVLYDGRHDLQGWQ-HIEYL 292
           L+  GF + +  ED HI I S E  + I ++    +V  +C+  D ++ L   + H  +L
Sbjct: 350 LYIVGFEQLINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFL 409

Query: 293 QD 298
            D
Sbjct: 410 WD 411


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 421 RAAQIGNVEELKRQAEYLIAKESQQPKKDDEGGPVDRRHPLGWTALMVAAANDKPDVVRE 600
           RAA +G ++ +K    YLI++ +          P++     G+T L  A A   PDV  E
Sbjct: 147 RAAAVGKIQVVK----YLISQRA----------PLNTSDSYGFTPLHFALAEGHPDVGVE 192

Query: 601 LIKLGGQT 624
           L++ G  T
Sbjct: 193 LVRAGADT 200


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 WQAGFSRFVFTEDLHIIILSQEENKIICRV 214
           WQ  FSR+   +  HI ++ + +  +  R+
Sbjct: 648 WQEAFSRYTLQDSFHITMIHESQKPVNSRI 677


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 433 IGNVEELKRQAEYLIAKES-QQPKKDDEGGPVDRRHPLGWTALMVAAANDKPDVVRE 600
           + N    +R+ E  I KE  QQ  +D +   +D     GWTAL+ +   +  D   E
Sbjct: 626 VDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEE 682


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 14   PSNYRESLRXD*KNMKLTCLTMLH*K*QNWDLYILSLWQAGFSRFVFTEDLHIIILSQEE 193
            P+N+ +SL    K   L  L M+        L +LS +  GFS  +    +H+I+L  + 
Sbjct: 1653 PTNF-DSLSNWTKEETLKLLNMMGKSSTTHSLKLLSTYMVGFSTSIIQYIIHLILLEFDF 1711

Query: 194  N 196
            N
Sbjct: 1712 N 1712


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 179 LSQEENKIICRVLDLQRVVCVLYDGRHDLQGWQH-IEYLQDTIVLEMRGNNV 331
           LS+EE K++   +    ++CVL + +   Q W H ++++  +I   M  NN+
Sbjct: 387 LSEEEEKLLLHFVWKSALICVLCERK--FQSWGHVVKHITQSI---MHNNNL 433


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 TREARWIAVTRSAGLRSWSRPPTTNPTSSANL 604
           T   + I V+   GLRS S  P   PTSS N+
Sbjct: 333 TEAEQSIDVSSDIGLRSDSSKPNEAPTSSENI 364


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 123 YGKPDSVDLFSLKTYTLLF*VKKR 194
           + KPD+ +LF++K+ T L+  KK+
Sbjct: 212 FQKPDTAELFNMKSQTDLYIFKKQ 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,802
Number of Sequences: 5004
Number of extensions: 52550
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)