Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C17
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0031 + 381389-381841                                             29   4.0  
10_02_0100 + 5296783-5297568                                           29   7.1  
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773...    29   7.1  
03_05_0540 + 25375261-25376931                                         29   7.1  
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373...    28   9.3  

>04_01_0031 + 381389-381841
          Length = 150

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 509 TREARWIAVTRSAGLRSWSRPPTTNPTSSANLSNSGAKPDL 631
           TRE RW     S   R W+ P T +P     L  + + P++
Sbjct: 68  TRERRWCTPRTSTLRREWALPDTASPPPPLPLEPAPSAPEM 108


>10_02_0100 + 5296783-5297568
          Length = 261

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 524 WIAVTRSAGLRSWSRPPTTNPTSSANLSNSGAKPDL 631
           W A+      RS S+PP   PT +A+ S+   K D+
Sbjct: 133 WKAIVDEHLTRSSSKPPAPAPTKTASASDHAKKTDM 168


>07_01_0917 +
           7735696-7735896,7735907-7736404,7736481-7736813,
           7736991-7737314,7737367-7737836,7738165-7738447,
           7738527-7738640
          Length = 740

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 518 ARWIAVTRSAGLRSWSRPPTTNPTSSANLSNSGAKPD 628
           ARW  V + +  R WSR  ++ P S  +L N+ + PD
Sbjct: 97  ARWRIVGKISRQR-WSRSTSSTPPSQNHLGNTHSSPD 132


>03_05_0540 + 25375261-25376931
          Length = 556

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 508 DEGGPVDRRHPLGWTALMVAAANDKPDVVRELIKLGGQT*PTGTVCG 648
           D G  +D     G+TAL  AA   + DVV  L+K G     T TV G
Sbjct: 431 DRGADMDATDAEGYTALHCAAEAGRADVVDLLLKSGANA-KTTTVKG 476


>08_01_1037 -
           10536547-10536585,10536814-10537102,10537202-10537327,
           10537336-10538291,10538379-10538825,10538904-10539632
          Length = 861

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 270 PCKSCRPS*STHTTRCRSKTRHIILFS 190
           PCK CRP+ S +  R    TR  IL S
Sbjct: 687 PCKYCRPTQSGNNNRFNFLTRSFILLS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,689,077
Number of Sequences: 37544
Number of extensions: 379019
Number of successful extensions: 1128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)