Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C17
         (940 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023214-1|BAB14467.1|  677|Homo sapiens protein ( Homo sapiens ...    47   9e-05
BC006404-1|AAH06404.1|  707|Homo sapiens ClpB caseinolytic pepti...    41   0.007
BC112094-1|AAI12095.1|  154|Homo sapiens dysferlin interacting p...    35   0.49 
BC093707-1|AAH93707.1|  154|Homo sapiens dysferlin interacting p...    35   0.49 
AF434846-1|AAO67357.1|  154|Homo sapiens dysferlin-interacting p...    35   0.49 
BC041099-1|AAH41099.1|  462|Homo sapiens nudix (nucleoside dipho...    32   2.6  
AL133620-1|CAB63746.1| 1031|Homo sapiens hypothetical protein pr...    32   3.5  
AB033076-1|BAA86564.2| 1777|Homo sapiens KIAA1250 protein protein.     32   3.5  

>AK023214-1|BAB14467.1|  677|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13152 fis, clone NT2RP3003385, highly similar to
           Mus musculus SKD3 mRNA. ).
          Length = 677

 Score = 47.2 bits (107), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = +1

Query: 511 EGGPVDRRHPLGWTALMVAAANDKPDVVRELIKLGGQT*PTGTVCGCGDXPXRPAGMHXL 690
           EG  V+ +H LGWTALMVAA N    VV+ L+  G      G          +  G+H L
Sbjct: 156 EGADVNAKHRLGWTALMVAAINRNNSVVQVLLAAGADP-NLGDDFSSVYKTAKEQGIHSL 214

Query: 691 DALQXREDXF 720
           + L  RED F
Sbjct: 215 EVLITREDDF 224


>BC006404-1|AAH06404.1|  707|Homo sapiens ClpB caseinolytic
           peptidase B homolog (E. coli) protein.
          Length = 707

 Score = 40.7 bits (91), Expect = 0.007
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 511 EGGPVDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           EG  V+ +H LGWTALMVAA N    VV+ L+  G
Sbjct: 156 EGADVNAKHRLGWTALMVAAINRNNSVVQVLLAAG 190


>BC112094-1|AAI12095.1|  154|Homo sapiens dysferlin interacting
           protein 1 protein.
          Length = 154

 Score = 34.7 bits (76), Expect = 0.49
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 514 GGPVDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           G  + +R   GWT L +A ++  PD+ R LI LG
Sbjct: 87  GADIHQRDEAGWTPLHIACSDGYPDIARYLISLG 120


>BC093707-1|AAH93707.1|  154|Homo sapiens dysferlin interacting
           protein 1 protein.
          Length = 154

 Score = 34.7 bits (76), Expect = 0.49
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 514 GGPVDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           G  + +R   GWT L +A ++  PD+ R LI LG
Sbjct: 87  GADIHQRDEAGWTPLHIACSDGYPDIARYLISLG 120


>AF434846-1|AAO67357.1|  154|Homo sapiens dysferlin-interacting
           protein 1 protein.
          Length = 154

 Score = 34.7 bits (76), Expect = 0.49
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 514 GGPVDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           G  + +R   GWT L +A ++  PD+ R LI LG
Sbjct: 87  GADIHQRDEAGWTPLHIACSDGYPDIARYLISLG 120


>BC041099-1|AAH41099.1|  462|Homo sapiens nudix (nucleoside
           diphosphate linked moiety X)-type motif 12 protein.
          Length = 462

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 544 GWTALMVAAANDKPDVVRELIKLG 615
           GWTALM AA N  P++V+ L++ G
Sbjct: 46  GWTALMYAARNGHPEIVQFLLEKG 69


>AL133620-1|CAB63746.1| 1031|Homo sapiens hypothetical protein
           protein.
          Length = 1031

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 523 VDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           VD R+  G T LM+AA     ++V+ELIK G
Sbjct: 31  VDERNECGQTPLMIAAEQGNLEIVKELIKNG 61


>AB033076-1|BAA86564.2| 1777|Homo sapiens KIAA1250 protein protein.
          Length = 1777

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 523 VDRRHPLGWTALMVAAANDKPDVVRELIKLG 615
           VD R+  G T LM+AA     ++V+ELIK G
Sbjct: 37  VDERNECGQTPLMIAAEQGNLEIVKELIKNG 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,845,707
Number of Sequences: 237096
Number of extensions: 1987794
Number of successful extensions: 5279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5278
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)