Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C17
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          27   0.19 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.32 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    27   0.32 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.2  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 497 QRKMTREARWIAVTRSAGLRSWSRPPTTNPTSS 595
           +R +T + +W+        RSWSRP  +  T+S
Sbjct: 26  KRLITGDEKWVVYNNIKRKRSWSRPRESAQTTS 58


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 497 QRKMTREARWIAVTRSAGLRSWSRPPTTNPTSS 595
           +R +T + +W+        RSWSRP     T+S
Sbjct: 147 KRLITGDEKWVVYNNIKRKRSWSRPREPAQTTS 179


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 496 PKKDDEGGPVDRRHPLGWTAL 558
           P KDD+G P+  ++P  W ++
Sbjct: 154 PVKDDKGNPIKDKYPNNWLSV 174


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 262 LAGVAAHRISSGYNSSGN 315
           ++G+A+ ++ S +N SGN
Sbjct: 353 VSGIASAKVRSMFNDSGN 370


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 248 DGRHDLQGWQH 280
           DG+HD + W H
Sbjct: 178 DGKHDYRVWNH 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,648
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)