Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C16
         (893 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O94387 Cluster: tRNA-splicing endonuclease positive eff...    35   3.2  
UniRef50_Q23DS1 Cluster: GTP-binding protein, putative; n=2; Euk...    34   4.3  
UniRef50_UPI0000DB7ACE Cluster: PREDICTED: similar to PNUTS CG33...    33   7.4  

>UniRef50_O94387 Cluster: tRNA-splicing endonuclease positive
            effector; n=1; Schizosaccharomyces pombe|Rep:
            tRNA-splicing endonuclease positive effector -
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1944

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 348  THLAMHNLHQGLRHVLPVSSPKLVIAEEKQTSTTVME-HNVSQLN 479
            THLA +NL+   R   P+ SP + I EEKQ +  V + HN+   N
Sbjct: 1796 THLASNNLNLASRDT-PIKSPSVGICEEKQEAHKVKKRHNIDSAN 1839


>UniRef50_Q23DS1 Cluster: GTP-binding protein, putative; n=2;
            Eukaryota|Rep: GTP-binding protein, putative -
            Tetrahymena thermophila SB210
          Length = 6516

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +3

Query: 402  SSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTHITNFGTPKGELSKT---------LPGPS 554
            ++ K VI      S TV++H V Q NQ+  T+I +  TP   +SKT         LP P 
Sbjct: 6404 ATTKNVIINPHPVSKTVVQHVVDQNNQLVQTNIISQKTP--SVSKTPAILCQKDQLPSPE 6461

Query: 555  KPSLKQVKN 581
            KP   Q+ N
Sbjct: 6462 KPIKSQLSN 6470


>UniRef50_UPI0000DB7ACE Cluster: PREDICTED: similar to PNUTS
           CG33526-PD, isoform D; n=1; Apis mellifera|Rep:
           PREDICTED: similar to PNUTS CG33526-PD, isoform D - Apis
           mellifera
          Length = 1257

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 24/70 (34%), Positives = 31/70 (44%)
 Frame = +3

Query: 396 PVSSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTHITNFGTPKGELSKTLPGPSKPSLKQV 575
           PV   K+ I E KQ  T V E + S +N V +T+ TN       +  TLP    P     
Sbjct: 283 PVPVYKITIREGKQILTKV-ETDASNINSVLNTNSTNVDVNGDIVENTLPVKQTPEEVAS 341

Query: 576 KNLNTNKVSG 605
             L+   VSG
Sbjct: 342 TELSDGVVSG 351


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,540,001
Number of Sequences: 1657284
Number of extensions: 14629531
Number of successful extensions: 36187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36164
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)