Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_C16
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 35 0.018
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 27 4.8
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.8
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 4.8
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 26 6.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 6.3
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 6.3
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 26 8.3
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 8.3
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 THLAMHNLHQGLRHVLPVSSPKLVIAEEKQTSTTVME-HNVSQLN 479
THLA +NL+ R P+ SP + I EEKQ + V + HN+ N
Sbjct: 1796 THLASNNLNLASRDT-PIKSPSVGICEEKQEAHKVKKRHNIDSAN 1839
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 QPTHLAMHNLHQG-LRHVLPVSSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTHITNFGTP 518
+P+++ HNLH G L SSP K + T + H +S + +I NFG
Sbjct: 14 EPSNVLCHNLHTGTLVSTFRQSSP------AKNATCTTLNHLLSAQHTRPQLNIHNFGKE 67
Query: 519 KGELSKTLP 545
+ S LP
Sbjct: 68 ILDQSIILP 76
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +2
Query: 14 TDLTIVESLRFYSIANLAKKQNLPSKGIPMSLTHSNIFPGITSRPLTAGINSVRLSSPNT 193
+D +++ S+ + ++ NLPS + + FP LT ++VR +S ++
Sbjct: 298 SDSSVITYTLINSVTSSSETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSS 357
Query: 194 INQV 205
+Q+
Sbjct: 358 TDQL 361
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 375 QGLRHVLPVSSPKLVIAEEKQTSTTVMEHNVSQLNQ-VTSTHITNFGTPKGELSKTLPGP 551
Q +P S E Q + + + V + +Q +TST T GT G + LPGP
Sbjct: 302 QAFTTTVPASGSVSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGTVEVILPGP 361
Query: 552 S 554
S
Sbjct: 362 S 362
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 381 LRHVLPVSSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTHITNFGTPK 521
LRH L +S KQ +T++ Q+N + + + TN G P+
Sbjct: 69 LRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPE 115
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 459 HNVSQLNQVTSTHITNFGTPKGELSKTLPGPSKPSLKQVKNLNTNK 596
HN+ + ++ T + + K E K++P K ++KQ K+ K
Sbjct: 271 HNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEEK 316
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 342 QPTHLAMHNLHQGLRHVLPVSSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTH-ITNFGTP 518
+ TH + H+ G +VL +SP V AE + ST + +S LN H G
Sbjct: 88 EETHWSKHSKRPGKLNVLTPTSPSNVNAEVQSIST---KTQLSLLNLSPHKHKKPKDGLD 144
Query: 519 KGELSKTLPG 548
L KTL G
Sbjct: 145 LSALQKTLNG 154
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 678 IAKHMEVNAWIKAQRQYEFMKNMGHQNQNEYHKDKQ 785
+ K E+N W + R E K HQ Q +K K+
Sbjct: 290 LEKQEEINFWKQRCRALETEKIHNHQGQQSKYKGKE 325
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 550 GPGKVLDNSPFGVPKLVICVLVT*FNWLTLCSITVVLVCFSSA--MTN 413
G GK+ N P + I V++ F WL S T++ V +A MTN
Sbjct: 258 GRGKIAHNPPHDAGMVYIGVVLIWFAWLCFNSGTLLTVNIRTAYIMTN 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,760
Number of Sequences: 5004
Number of extensions: 68058
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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