Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C16
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686...    30   2.2  
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601...    29   5.0  
03_06_0421 - 33797836-33797992,33798450-33798549,33798646-337987...    29   6.6  
02_04_0150 - 20215070-20217577                                         29   6.6  

>03_05_0350 +
           23368111-23368219,23368519-23368526,23368650-23368658,
           23368768-23368839,23368978-23369097,23369638-23370058,
           23370131-23370285,23370461-23370625,23370822-23370825,
           23371739-23371799,23371933-23372035,23372422-23372854,
           23372978-23373120,23373608-23373740,23375567-23375576,
           23375852-23375975,23376595-23377012,23377153-23377343,
           23377569-23377811
          Length = 973

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 333 KYHQPTHLAMHNLHQGLRHVLPVSSPKLVIAEEKQTSTTVMEHNVSQLNQV 485
           K+ +P H++ ++      H LPV SP+ V   EKQ  ++  E++ + + +V
Sbjct: 788 KWEEPLHISSNS------HDLPVKSPQNVSKSEKQWDSSEQENDTANIEEV 832


>02_05_0968 +
           33156585-33156941,33158510-33159902,33160035-33160118,
           33160216-33160265
          Length = 627

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 41  RFYSIANLAKKQNLPSKGIPMSLTHSNIFPGITSRPLTAGINSVRLS 181
           R  S ++ A K +LP  G   +L+     P  + RP TAG  S R++
Sbjct: 147 RTRSFSSTATKSSLPDAGARRALSQEPPPPPTSERPTTAGAGSHRVA 193


>03_06_0421 -
           33797836-33797992,33798450-33798549,33798646-33798700,
           33798965-33799085,33799759-33799856,33800004-33800105,
           33800196-33800360,33800441-33800522,33800960-33801117,
           33801214-33801339,33801533-33801616,33802011-33802100,
           33802188-33802258,33803420-33803513,33803585-33803671,
           33804258-33804306,33805450-33805538,33805691-33805756,
           33806009-33806071,33806174-33806282,33806376-33806446,
           33807212-33807298,33807390-33807535,33808848-33808953,
           33809429-33809494,33809672-33809741,33810839-33811206
          Length = 959

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 STTVMEHNVSQLNQVTSTHITNFGTPKGELSKTLPGPSKPS 563
           +T +  HN+ +L  V S  I N      EL + +PGP  P+
Sbjct: 256 ATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPT 296


>02_04_0150 - 20215070-20217577
          Length = 835

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 312 HCSLPLIKYHQPTHLAMHNLH 374
           H S P+IK HQ T L +H LH
Sbjct: 547 HRSRPVIKAHQVTMLKLHQLH 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,469,355
Number of Sequences: 37544
Number of extensions: 379735
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)