Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C14
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = +1

Query: 496 PPPPXFFFXXKKXPPPXXXXGGGXAPPPXPXGG-GXGGKKXF 618
           PPP          PPP    G G  PPP P      GG + +
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 605 PPXPPPXGXGGGAXPPP 555
           PP PPP G  G   PPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 605 PPXPPPXGXGGGAXPPP 555
           PP PPP   G G  PPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 728 PPPPXXXPXXXGGGGXXPPP 787
           PPPP   P   G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 605 PPXPPPXGXGGGAXPPP 555
           PP PPP     GA PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 831 PPPPXKKKXXPXRAXGGGXXPPPPXXXGXXXGG 733
           PPPP      P    G G  PPPP       GG
Sbjct: 761 PPPPPP----PPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 605 PPXPPPXGXGGGAXPPPXXXXG 540
           PP PPP G    + PPP    G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = +1

Query: 556 GGGXAPPPXPXG-GGXGG 606
           GG   PPP P G GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,764
Number of Sequences: 5004
Number of extensions: 30148
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)