Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C13
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    71   2e-13
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   2.7  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 34/51 (66%), Positives = 36/51 (70%)
 Frame = +3

Query: 54  PQSLLNGMXKFLELLGITFRRDPNNFXPRINKHASVKDIEQKRAGQYFFLE 206
           PQSLL GM  FL+ L +TFRRDPN   PRINK  S  D EQK AG YFFLE
Sbjct: 542 PQSLLTGMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFFLE 592


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 316 FIIVLHLIGKYTVGRSSPCDSNNIYKYNNVYIF 218
           +++ +  +  Y +    P + NNIY  NN+++F
Sbjct: 96  YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,012
Number of Sequences: 5004
Number of extensions: 48227
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)