Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C12
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.59 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.8  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    27   4.2  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = -3

Query: 183  VFWAFLSDVTXRPXNFRLENLNLTSIL*KISFYATT*HKQIFRMKS 46
            V+WA+++ V   P NF+L + ++T++  K  +  ++   +IF ++S
Sbjct: 1035 VYWAYVAPVLVSPDNFKLVDGSITALQRKNLYTLSSILSEIFSIES 1080


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 90  MKSFIEYSSDSDFPIENXPDGVLRLIKMPKTHWRGYR 200
           M++F++Y+ +   P+ + PD V  L K  K HW  Y+
Sbjct: 858 METFVKYALEKLRPLIS-PDSVCILSKEDKKHWLKYK 893


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 295 FWPAQPPX--VWGGEIXKNXGGFFSGGEKK--PPPXKRAF 402
           F P Q P    WG +  ++   F  GGEK+  P P  RAF
Sbjct: 27  FGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,730
Number of Sequences: 5004
Number of extensions: 22272
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)