Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C12
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...    31   1.4  
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546...    28   7.6  

>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 90  MKSFIEYSSDSDFPIENXPDGVLR 161
           ++SF+E +  S FPI+N P GV R
Sbjct: 9   LRSFVEVAPGSHFPIQNLPFGVFR 32


>06_01_0738 +
           5458182-5458374,5460512-5461766,5461861-5462053,
           5462151-5462344,5462443-5462601,5462683-5463025
          Length = 778

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -2

Query: 595 GGGGGAQXIXXGGXXXPPGVFFFFLKGAPPPPQKXXXXGGXP 470
           GGGG A     GG   PPG       G PP        GG P
Sbjct: 75  GGGGAASNNGGGGSAPPPGNLAG--SGTPPAKGSGGDGGGAP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,902
Number of Sequences: 37544
Number of extensions: 241556
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)