Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C12
         (809 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    26   1.6  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       26   1.6  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       26   1.6  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   8.4  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 42  DLISFEKFACVKS*RKMKSFIEYSSDSDFPIENXPD 149
           ++  FE  A  +S +     +EY  D DFP ++  D
Sbjct: 298 EMEDFEHAAINRSKKTNPQIVEYEFDDDFPFDDDSD 333


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 42  DLISFEKFACVKS*RKMKSFIEYSSDSDFPIENXPD 149
           ++  FE  A  +S +     +EY  D DFP ++  D
Sbjct: 68  EMEDFEHAAINRSKKTNPQIVEYEFDDDFPFDDDSD 103


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 42  DLISFEKFACVKS*RKMKSFIEYSSDSDFPIENXPD 149
           ++  FE  A  +S +     +EY  D DFP ++  D
Sbjct: 68  EMEDFEHAAINRSKKTNPQIVEYEFDDDFPFDDDSD 103


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 42  DLISFEKFACVKS*RKMKSFIEYSSDSDFPIENXPD 149
           ++  FE  A  +S +     +EY  D D P ++  D
Sbjct: 68  EMEDFEHAAINRSKKTNPQIVEYEFDDDLPFDDDSD 103


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,416
Number of Sequences: 2352
Number of extensions: 6617
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)