Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C11
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.40 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.70 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    29   1.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   4.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   4.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   8.6  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 225 SLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 323
           +L S L      LDD+ K L+L FP++I + RV
Sbjct: 167 ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -1

Query: 736 SASSXXLTAYVXAXTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATG 557
           S+SS   TA   + ++  IS    + S PTSTS T+ S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 556 LLLSS 542
              SS
Sbjct: 315 SSFSS 319


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +3

Query: 468 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNV--R 638
           VNS G+   E   +   F ++  ++ E+ K  +  P    P   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379

Query: 639 DVDVGLETAQKTNEIAKAVXAXTYAVXIXDDAEFLXI 749
           DVD+ LET +K  ++        Y     +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 673 VFWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATGLLL 548
           V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 88  VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 204 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 383
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 384 VKAKN 398
            K  N
Sbjct: 163 SKKLN 167


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 AAVSAAPQYYHGSSHWPYHHYDPXQSL 196
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 50  VYFESLFERSTRMIALVLCGLLAAVSAAPQ 139
           +Y +++ E + RM+  +L  + +++SAAPQ
Sbjct: 767 IYKDNMMEITNRMLPTLLMRIFSSLSAAPQ 796


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 222 HSLWSNLANEMQHLDD--MMKELSL-KFPSI-INEGRVEGDKYQISIHLPGY---EQKDI 380
           H++  N A E   ++D  ++K +S   F S+ + + R  GD + I I        + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632

Query: 381 NVKAKNGVLMVQANSAF 431
           NV+A+  +LM Q  S F
Sbjct: 633 NVRAERAILMSQGESPF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,148
Number of Sequences: 5004
Number of extensions: 62376
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)