Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C10
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    79   4e-15
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    43   3e-04

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 41/92 (44%), Positives = 50/92 (54%)
 Frame = +3

Query: 261 SXEXLQXXYXDXXSRPXXPGLVKYXXSGPVVPMVWEGLNVVKTGPXN*KXXXXPXDSHPG 440
           S   L+  Y D   +P  P L++Y  SGPVV MVW+GL+VVK G  +      P  S PG
Sbjct: 44  SKAHLEVHYQDLKDKPFFPSLIEYMSSGPVVAMVWQGLDVVKQG-RSMLGATNPLASAPG 102

Query: 441 TXRGXLXXXXGRXIIHXSDSVESXNXXIXLWF 536
           T RG      GR I H SD+V+S N  I  WF
Sbjct: 103 TIRGDFCIQTGRNICHGSDAVDSANREIAHWF 134


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 303 RPXXPGLVKYXXSGPVVPMVWEGLNVVKTGPXN*KXXXXPXDSHPGTXRGXLXXXXGRXI 482
           +P  P L+ Y  SGPVV M+WEG +VVK             +   G  R        R  
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRA-----RVILGEELEVGEFRSIFYDLVVRDT 87

Query: 483 ---IHXSDSVESXNXXIXLWFTD 542
               H SDSV S N    LWF +
Sbjct: 88  HKGCHCSDSVASANREYVLWFEE 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,007,060
Number of Sequences: 27780
Number of extensions: 51371
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)