Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C08
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.6  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   4.6  
09_02_0603 - 11150739-11150746,11150791-11151340                       29   6.1  
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    28   8.1  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
 Frame = -2

Query: 681 GGGXXPPPPGGXXXXFXXXKKKXXXXGGFFFXXPPXG------XXXXGGGGGXXXP 532
           GGG  PP PGG        +      GG     PP G          GGGGG   P
Sbjct: 127 GGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGP 182



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
 Frame = -1

Query: 679 GGGXXPPPXGGGXXXFXXKKKKXXXXGXFFXXPPXGG-----XKXXGGGGG 542
           GG   P P GGG      +       G     PP GG      +  GGGGG
Sbjct: 128 GGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGG 178


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +3

Query: 543 PPPPPXXFXPPXGGXKKKXPXXXXFFFXXXKXXXPPPXGGGXXPPP 680
           PPPPP    PP    K   P          K   PPP   G  PPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPP------PPAKGPPPPPPPKGPSPPP 366



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
 Frame = +1

Query: 529 PGXXXPPPPPXXXXPPGGXXKKKXPXXXXFFFXXXKXXXXPPXGG--GXXPPPXXK 690
           P    PPPPP    PP    K   P               PP GG  G  PPP  K
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPPPPPPP---KGPSPPPPPPPGGKKGGPPPPPPK 383


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 534 GXXPPPPPXXFXPPXGGXKKKXPXXXXFFFXXXKXXXPPPXGGGXXPPP 680
           G  P PPP    PP        P              PPP GG   PPP
Sbjct: 262 GGPPRPPPPQVPPPPPQAPPPPPPNAPM--GMPPRIPPPPVGGTQPPPP 308


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +3

Query: 534 GXXPPPPPX-XFXP-PXGGXKKKXPXXXXFFFXXXKXXXPPPXGGGXXPPP 680
           G  PPPPP   F P P  G     P    F         PPP   G  P P
Sbjct: 42  GFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQSRVPPPPPQLGVPPLP 92


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = -1

Query: 775 PPPXXKKKKXXXXXXPPPPXKXXXXXXFFXXXGGGXXPPP--XGGG 644
           PPP   ++       PPPP        +     GG   PP   GGG
Sbjct: 71  PPPSHHERAPSDAPPPPPPAPYAGGSPYHRHAAGGGETPPARRGGG 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,533,866
Number of Sequences: 37544
Number of extensions: 834134
Number of successful extensions: 2655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)