Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C07
         (914 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95006-1|AAB53638.1|   63|Homo sapiens D9 splice variant A protein.    45   4e-04
BC009571-1|AAH09571.1|   63|Homo sapiens stimulated by retinoic ...    43   0.001
U95007-1|AAB53639.1|   58|Homo sapiens D9 splice variant B protein.    31   5.8  
BC011610-1|AAH11610.1|   57|Homo sapiens STRA13 protein protein.       31   5.8  

>U95006-1|AAB53638.1|   63|Homo sapiens D9 splice variant A protein.
          Length = 63

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 28/74 (37%), Positives = 40/74 (54%)
 Frame = +3

Query: 144 STIKKDVIKXLLXNHFQXSKTKXAPHALMLLADVAKCLVTETCLRAVKQAQREGSNKVDV 323
           S  +K+++  LL  HF+  KTK                  E  +R V+QAQ E + +VDV
Sbjct: 8   SGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAEDALRVDV 49

Query: 324 EHIEKCLPQLMLDF 365
           + +EK LPQL+LDF
Sbjct: 50  DQLEKLLPQLLLDF 63


>BC009571-1|AAH09571.1|   63|Homo sapiens stimulated by retinoic
           acid 13 homolog (mouse) protein.
          Length = 63

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 27/74 (36%), Positives = 39/74 (52%)
 Frame = +3

Query: 144 STIKKDVIKXLLXNHFQXSKTKXAPHALMLLADVAKCLVTETCLRAVKQAQREGSNKVDV 323
           S  +K+++  LL  HF+  KTK                  E  +R V+QAQ E + + DV
Sbjct: 8   SGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAEDALRADV 49

Query: 324 EHIEKCLPQLMLDF 365
           + +EK LPQL+LDF
Sbjct: 50  DQLEKVLPQLLLDF 63


>U95007-1|AAB53639.1|   58|Homo sapiens D9 splice variant B protein.
          Length = 58

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 144 STIKKDVIKXLLXNHFQXSKTKXAPHALMLLADVAKCLVTETCLRAVKQAQREGSNKVDV 323
           S  +K+++  LL  HF+  KTK                  E  +R V+QAQ E + +VDV
Sbjct: 8   SGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAEDALRVDV 49

Query: 324 EHIEKCL 344
           + +EK L
Sbjct: 50  DQLEKLL 56


>BC011610-1|AAH11610.1|   57|Homo sapiens STRA13 protein protein.
          Length = 57

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 144 STIKKDVIKXLLXNHFQXSKTKXAPHALMLLADVAKCLVTETCLRAVKQAQREGSNKVDV 323
           S  +K+++  LL  HF+  KTK                  E  +R V+QAQ E + +VDV
Sbjct: 7   SGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAEDALRVDV 48

Query: 324 EHIEKCL 344
           + +EK L
Sbjct: 49  DQLEKLL 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,350,706
Number of Sequences: 237096
Number of extensions: 2137642
Number of successful extensions: 7931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7931
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)