Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C07
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40934-3|AAA81681.1|   79|Caenorhabditis elegans Hypothetical pr...    42   8e-04
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    30   2.7  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    30   2.7  
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40934-3|AAA81681.1|   79|Caenorhabditis elegans Hypothetical
           protein F35H10.5 protein.
          Length = 79

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 150 IKKDVIKXLLXNHFQXSKT-KXAPHALMLLADVAKCLVTETCLRAVKQAQREGSNKVDVE 326
           IK+  ++ +L    +  K     P AL +L  +   L  E+  RA + A   GS  V  E
Sbjct: 5   IKQSTVRSMLIVARRGKKRLNLDPDALAVLTALINLLAQESVARAAQSAANTGSRHVTKE 64

Query: 327 HIEKCLPQLMLDF 365
           H+++ + QLMLDF
Sbjct: 65  HLKRVIAQLMLDF 77


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 439 ELFEMITLSRFYHRIARHRSRVHPYYLEPLCPSTVRVQIF 558
           E  E +TL +FY R    R R  P +L     S +  QI+
Sbjct: 263 EFLERVTLEKFYRREIERRLRKQPKFLNDFVASIIIDQIY 302


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 439 ELFEMITLSRFYHRIARHRSRVHPYYLEPLCPSTVRVQIF 558
           E  E +TL +FY R    R R  P +L     S +  QI+
Sbjct: 268 EFLERVTLEKFYRREIERRLRKQPKFLNDFVASIIIDQIY 307


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 472 YHRIARHRSRVHPYYLEPLCPSTVRVQIFFAAY 570
           Y R+ +   R+H + +EP C  T + +++ A Y
Sbjct: 91  YVRVGQTEGRLHTFIVEPFCAHTEKDEMYIAIY 123


>Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical
           protein C06B3.11 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 634 NEVCVEYLTVGNSLALLPALLTSMSD 711
           NEVC  YLT+   L ++P +LT ++D
Sbjct: 168 NEVCGAYLTMFRGLQMVPIILTVVTD 193


>AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.6 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 454 ITLSRFYHRIARHRSRVHPYYLEPLCPSTVRVQIF 558
           +TL  F+H    H   +HP Y  P    T+++++F
Sbjct: 20  LTLRMFFHLSLDHEVCLHPKYFGPNLNETIKMKLF 54


>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 472 YHRIARHRSRVHPYYLEPLCPSTVRVQIFFAAY 570
           Y ++ +   R+H + +EP C  T   +++ A Y
Sbjct: 91  YVKVGQTEGRLHTFIVEPFCAHTENEEMYIAIY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,927
Number of Sequences: 27780
Number of extensions: 328763
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)