Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C07
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.96 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 529 IVAPGSMDELYSYGGRCDGKNETMLSSQTIPPIIHTI 419
           I   G   E +SYGG+    N+T++  +  P ++H I
Sbjct: 2   IAVSGPSYEAFSYGGQARFNNQTVV-DKVPPDMLHLI 37


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 749 DIAYGPSDGEWLPSLMDVSNAGSRAKLL----PTVKYSTQTSFE 630
           ++ Y PS+  WLP ++  +NA    ++      T+KY+   S++
Sbjct: 106 EMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWK 149


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 649 EYLTVGNSLALLPALLTSMSDGNHSPSDGP 738
           +YL VGNS A  P  L++ +  + S S  P
Sbjct: 815 DYLMVGNSPASSPRYLSAAATSSTSTSPRP 844


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 284  DCTQACLGDQTFGHICQQHKSM 219
            DCT A    QT  HI Q H  M
Sbjct: 1074 DCTMAEDVYQTLKHIIQTHGEM 1095


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,383
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)