Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C06
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   4.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 154  PAVASGPTRPQPHVGAVALHAGSTGTVPLRCPSAKI 47
            PA +  P  P+P V A  + A S+G  P+  P+A +
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV 1188


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 264 IKSPIMDMRVCLVASRRGESRQXARPVQRPSDVAGRRRPSHPGPRDPSHM 115
           ++SP          +  G  R  A  + RPS    RR PS    R PS++
Sbjct: 363 VRSPSRIQSTLSSRTTTGNVRTKAANIVRPSSSINRRPPSSINQRPPSNL 412


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 719 VLNAKRLTRNANLLSRRS*YLTCSQNK 639
           VL +KRL R++ + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,685
Number of Sequences: 5004
Number of extensions: 56754
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)