Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C06
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722...    30   2.2  
08_02_1045 + 23918304-23918564                                         29   5.0  
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    29   6.6  
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703     29   6.6  
10_08_0328 - 16805296-16806121,16806493-16807274                       28   8.7  
09_01_0025 - 441528-444284                                             28   8.7  
01_04_0056 + 15476868-15476896,15477581-15478259                       28   8.7  

>12_02_0030 +
           12469707-12469902,12470337-12470658,12472208-12472245,
           12472486-12473573
          Length = 547

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +2

Query: 53  GTRAAQRDCASATRVQRDRPNMWLGSRGPGCDGRRRPATSLGLWTGRAY*RDSPRRLATR 232
           G RAA    A+    +R    +W G    G  GRRR A+S   W   A  R   RR A R
Sbjct: 106 GARAAVLGGAATIGARR----LWAGGAARGGFGRRRGASSTHAWRPGAGRRKGRRRAARR 161

Query: 233 QT 238
           ++
Sbjct: 162 RS 163


>08_02_1045 + 23918304-23918564
          Length = 86

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  SGTVPVLPACNATAPTCGWGRVGPDATAGGVQRRRSASGLAAXTD 203
           +G  P LPA    A    +G+ G  +  GG +RRR A+  AA  D
Sbjct: 34  TGEPPPLPAAAGPADGEAFGQSG--SAVGGARRRREAAAAAAARD 76


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 165 AGRRRPSHPGPRDPSHMLGRSRCTRVALAQSR 70
           AG  RPS  GPR      G  RC ++A A++R
Sbjct: 489 AGLHRPSSDGPRRRPMAHGLRRCRQLACARTR 520


>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
          Length = 379

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/76 (28%), Positives = 31/76 (40%)
 Frame = -2

Query: 323 SCLNIYLR*FVIYHIIQSSK*SPPLWICAFVWSRVVEASHVSXRGQSRGRATSLDAAGRR 144
           +CL+  +   V Y  +  ++ SPP  +CA  W R  +   V+    S G    L      
Sbjct: 271 ACLDPAMDVAVAYRGLALARASPPPRVCARGWGRTEQVPVVA----SSGNGVRLPG---- 322

Query: 143 IRAHATPATCWGGRVA 96
              H   A  WGG VA
Sbjct: 323 FALHGLEADAWGGAVA 338


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 78  VPVLPACNATAPTCGWGRVGPDATAGGVQRRRSAS-GLAAXTD 203
           V  L A    AP CGW  V  DA AG V R R  S GL    D
Sbjct: 45  VAALSAWTRAAPVCGWRGVACDA-AGLVARLRLPSLGLRGGLD 86


>09_01_0025 - 441528-444284
          Length = 918

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 294  RHLPHNPEFKIKSPIMDMRVCLVASRRGESRQXARPVQRPSDVAGRRRPSHPGPRDPSHM 115
            R L   P F +  P +D R+ L  + R E ++        + V G+    H GP+  +  
Sbjct: 799  RELRKKPYF-VYEPQIDDRLTLDETARKEGKKAHMDENLTTFVCGKAGVPHSGPKQAASN 857

Query: 114  LGRSRCTRVAL 82
            L  S C+ V +
Sbjct: 858  LFDSNCSPVRM 868


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 160 TP-PAVASGPTRPQPHVGAVALHAGSTGTVPLRCPSAKILRNS 35
           TP P     PTRP PH   + LH   +GT+PL    A+   +S
Sbjct: 87  TPKPNTPPDPTRPAPH---LTLHHQYSGTLPLPISLARAFTSS 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,730,991
Number of Sequences: 37544
Number of extensions: 397793
Number of successful extensions: 1384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)