Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_C06
(894 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035914-1|AAH35914.1| 506|Homo sapiens CCDC88C protein protein. 34 0.61
BC080573-1|AAH80573.1| 360|Homo sapiens similar to RIKEN cDNA A... 32 2.4
AK027455-1|BAB55124.1| 725|Homo sapiens protein ( Homo sapiens ... 31 4.3
Z93024-1|CAI18789.1| 720|Homo sapiens G-2 and S-phase expressed... 31 5.6
U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein. 31 5.6
CT841519-1|CAJ86449.1| 720|Homo sapiens GTSE1 protein. 31 5.6
BC075828-1|AAH75828.1| 720|Homo sapiens G-2 and S-phase express... 31 5.6
BC006325-1|AAH06325.1| 720|Homo sapiens G-2 and S-phase express... 31 5.6
AL031588-1|CAI19318.1| 720|Homo sapiens G-2 and S-phase express... 31 5.6
AK222806-1|BAD96526.1| 720|Homo sapiens G-2 and S-phase express... 31 5.6
AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein. 31 5.6
AF223408-1|AAF31459.1| 720|Homo sapiens B99 protein. 31 5.6
AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein. 31 5.6
AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protei... 31 7.5
AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein. 31 7.5
BC011805-1|AAH11805.2| 251|Homo sapiens Unknown (protein for IM... 30 9.9
>BC035914-1|AAH35914.1| 506|Homo sapiens CCDC88C protein protein.
Length = 506
Score = 34.3 bits (75), Expect = 0.61
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = -1
Query: 276 PEFKIKSPIMDMRVCLVASRRGESRQXARPVQRPSDVAGRRRPSH--PGPRDP-SHMLGR 106
P F++ V ++ +S RP Q P + GR SH P P SH L R
Sbjct: 277 PNFRLTEAEAPPSVAPRQAQPPQSLSLGRPRQAPEALGGRETGSHTLQSPAPPSSHSLAR 336
Query: 105 SRCTRVALAQSRCAARVPKS 46
R V A S C P+S
Sbjct: 337 ERTPLVGKAGSSCQGPGPRS 356
>BC080573-1|AAH80573.1| 360|Homo sapiens similar to RIKEN cDNA
A230078I05 gene protein.
Length = 360
Score = 32.3 bits (70), Expect = 2.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 240 RVCLVASRRGESRQXARPVQRP--SDVAGRRRPSHPGPRDPSH 118
RV L+ R+ E R+ R +RP + + G R P PGP DP++
Sbjct: 256 RVQLMRIRQQEDRKEKRRKKRPPRAPLRGPRAPPRPGPPDPAY 298
>AK027455-1|BAB55124.1| 725|Homo sapiens protein ( Homo sapiens
cDNA FLJ14549 fis, clone NT2RM2001670, weakly similar to
ZINC FINGER PROTEIN 29. ).
Length = 725
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 156 RRPSHPGPRDPSHMLGRSRCTR--VALAQSRCAARVP 52
R PSH GP D S G+S C R V L + CA++VP
Sbjct: 69 REPSHAGPLDFSCNAGKS-CPRADVTLEEKGCASQVP 104
>Z93024-1|CAI18789.1| 720|Homo sapiens G-2 and S-phase expressed 1
protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.
Length = 3321
Score = 31.1 bits (67), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 157 PPAVASGPTRPQPHVGAVALHAGSTGTVPLRCP 59
PP+ P R + + ++LH G T VP CP
Sbjct: 2404 PPSGEPHPPRKEDEIQDISLHGGKTQEVPTACP 2436
>CT841519-1|CAJ86449.1| 720|Homo sapiens GTSE1 protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>BC075828-1|AAH75828.1| 720|Homo sapiens G-2 and S-phase expressed
1 protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>BC006325-1|AAH06325.1| 720|Homo sapiens G-2 and S-phase expressed
1 protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>AL031588-1|CAI19318.1| 720|Homo sapiens G-2 and S-phase expressed
1 protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>AK222806-1|BAD96526.1| 720|Homo sapiens G-2 and S-phase expressed
1 variant protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.
Length = 3336
Score = 31.1 bits (67), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 157 PPAVASGPTRPQPHVGAVALHAGSTGTVPLRCP 59
PP+ P R + + ++LH G T VP CP
Sbjct: 2415 PPSGEPHPPRKEDEIQDISLHGGKTQEVPTACP 2447
>AF223408-1|AAF31459.1| 720|Homo sapiens B99 protein.
Length = 720
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 213 GESRQXARPVQRPSDVAGRRRPSHPGPRDPSHMLGRSRCTRVALAQS 73
GE R A PS A R PGP +H L R CT A +Q+
Sbjct: 160 GEPRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQA 206
>AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.
Length = 3284
Score = 31.1 bits (67), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 157 PPAVASGPTRPQPHVGAVALHAGSTGTVPLRCP 59
PP+ P R + + ++LH G T VP CP
Sbjct: 2442 PPSGEPHPPRKEDEIQDISLHGGKTQEVPTACP 2474
>AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protein 1
protein.
Length = 1431
Score = 30.7 bits (66), Expect = 7.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -3
Query: 184 PEAERRRWTPPAVA----SGPTRPQPHVGAVALHAGSTGTVPLRCPS 56
PE +R TPP V+ PT P+P L +GS G P P+
Sbjct: 1258 PEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPA 1304
>AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.
Length = 1154
Score = 30.7 bits (66), Expect = 7.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -3
Query: 184 PEAERRRWTPPAVA----SGPTRPQPHVGAVALHAGSTGTVPLRCPS 56
PE +R TPP V+ PT P+P L +GS G P P+
Sbjct: 981 PEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPA 1027
>BC011805-1|AAH11805.2| 251|Homo sapiens Unknown (protein for
IMAGE:4335840) protein.
Length = 251
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1
Query: 61 GSAAGLCQCYPRATRPPQHVAGVAWARMRRPAASSDVARPLDWP 192
G+A L A QHVA V WA RP +AR L P
Sbjct: 44 GAAVALLVLVRAAAPAAQHVAPVGWAAHPRPRTPRSLARALRCP 87
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,695,068
Number of Sequences: 237096
Number of extensions: 2077122
Number of successful extensions: 9378
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9374
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -