Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C05
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   130   3e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   128   8e-31
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        28   2.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   6.5  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   8.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   8.6  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   8.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   8.6  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  130 bits (314), Expect = 3e-31
 Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
 Frame = +2

Query: 89  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 262
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 263 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 355
            CK+ +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  128 bits (310), Expect = 8e-31
 Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
 Frame = +2

Query: 89  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 262
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60

Query: 263 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 355
            C +T+AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 282 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 175
           +T +L ++  Q+ T   F+A + +NE  +FA W TS
Sbjct: 69  STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 185 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 274
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 220 GCYETFLCRHLVL*AMQEDCSRRSLGILHYCCLIMQICRQE 342
           G  + +LC+ L +    E C   S+G+LH     +  C+++
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLHSRIRRLIYCKKQ 274


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 194 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 283
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 172 LFDHFT*RGTVTCAIFASNSNLFGT 98
           +FD FT    +T  I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 137  VCHICQ*FQPFWYVWPF 87
            + ++ Q FQ  WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,256
Number of Sequences: 5004
Number of extensions: 45706
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)