Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C04
         (899 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    59   2e-08
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    54   7e-07

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +3

Query: 195 ITLFS-IVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYRRNPLNW 344
           I LFS IVGF++GY+ +QF  +VY            T+PPWP+YRR+PL W
Sbjct: 27  IYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKW 77


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 195 ITLFS-IVGFVWGYIVQQFSQSVYXXXXXXXXXXXX--TVPPWPMYRRNPLNW 344
           I LFS IVGF++GY+ +QF  +VY              T+PPWP+YRR+PL W
Sbjct: 27  IILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLAQLTLPPWPIYRRHPLKW 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,839,495
Number of Sequences: 237096
Number of extensions: 1353895
Number of successful extensions: 2125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2124
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)