Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C03
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    95   6e-20
Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical pr...    82   6e-16
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    43   3e-04
AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 45/95 (47%), Positives = 60/95 (63%)
 Frame = +1

Query: 46  YLGRITTPAPKLRDIILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDNKCW 225
           +LG+   PAP L++  L  +    +Y  +V  M ++Y    L+HADLSE+N+L  D K W
Sbjct: 240 FLGKDGWPAPLLKNANLSQEDAEPMYVGLVRDMRRLYRECKLVHADLSEFNMLVHDGKLW 299

Query: 226 FIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGV 330
            IDVSQSV+ DHP+ LEFL  DC NV  FF + GV
Sbjct: 300 IIDVSQSVEQDHPHALEFLRMDCNNVNKFFRELGV 334


>Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK632.3 protein.
          Length = 510

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
 Frame = +1

Query: 46  YLGRITTPAPKLRDI---ILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWW-D 213
           +LG     AP+L+++       D+  +VY++V   M +MY    L+HADLSE+N+L   D
Sbjct: 340 FLGDQGLAAPRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPD 399

Query: 214 NKCWFIDVSQSVQPDHPNGLEFLLRDCRNVVNFFEKKGVSHVQTAEELLN 363
           NK   IDVSQ++   HP  L+FL RD +N++ FF + G  ++ T  +L N
Sbjct: 400 NKVHVIDVSQAMDLSHPRSLQFLTRDIQNIITFFTRIGTPNLPTYVQLFN 449


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 SVYNEVVESMHKMYNVGHLIHADLSEYNILWW-DNKCWFIDVSQSVQPDHPNGLEFLLRD 291
           ++Y+ ++  + KM   G +IH D +E+N++   D +   ID  Q V  DHPN   +  RD
Sbjct: 207 ALYDRLMALIVKMARHG-VIHGDFNEFNLIMLEDERIVMIDFPQMVSIDHPNAEYYFDRD 265

Query: 292 CRNVVNFFEKK 324
              V  FF++K
Sbjct: 266 VTCVRTFFKRK 276


>AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical
           protein T05A8.4 protein.
          Length = 736

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 103 DKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDNKCWFIDVS---QSVQPDHPNGL 273
           D W + ++EVV+S     ++GH +  D S   +L+ D    F   S    +VQPD  N  
Sbjct: 150 DNWRTTFDEVVKSFGGWPSLGHQMKPDAS-IEMLYADMVAKFKADSLFKATVQPDDKNSQ 208

Query: 274 EFLLRDCRNVVNFFEK 321
             +L   +  +N F +
Sbjct: 209 RHVLLIDQPQLNLFAR 224


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 311 KLTTLRQSRSKNSNPLGWSGCTD*ETSINQHLLSH--QRMLYSDR 183
           + TT  ++ + +SNP  WS C+  E      L     ++M  SDR
Sbjct: 467 RTTTTSENNADSSNPTAWSSCSSDEEEDEDELQKSRIRKMTISDR 511


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 311 KLTTLRQSRSKNSNPLGWSGCTD*ETSINQHLLSH--QRMLYSDR 183
           + TT  ++ + +SNP  WS C+  E      L     ++M  SDR
Sbjct: 484 RTTTTSENNADSSNPTAWSSCSSDEEEDEDELQKSRIRKMTISDR 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,175
Number of Sequences: 27780
Number of extensions: 275189
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)