Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C01
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.69 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   4.9  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 20/82 (24%), Positives = 30/82 (36%)
 Frame = +2

Query: 560  KAXKRPXTXKRPRXWRFSIGSAPLDXHHKNRRSSXRWKNPTGLXXYQXVSPXKAPPVRSP 739
            K  +R  +  +P  ++  +G      H    +   RW N  G       +P   PP+  P
Sbjct: 1835 KLLRRDESKDQPTVYKAKLGEKS---HLHYDKELKRWVNDDGSDLSNQAAPPPPPPMALP 1891

Query: 740  XSXPXPXPDTLSNFPPFGXAWG 805
             + P P     S  PP G   G
Sbjct: 1892 KAGP-PSAAPTSALPPAGPPAG 1912


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 629 LDXHHKNRRSSXRWKNPTGLXXYQXV 706
           L  +HKNR+S+     P GL  Y+ V
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,203
Number of Sequences: 5004
Number of extensions: 21302
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)