Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_C01
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0188 - 11338013-11338976,11339843-11340183 32 0.55
09_02_0615 - 11251869-11252832,11253699-11254039 32 0.55
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 32 0.55
06_03_0490 - 21375400-21376363,21377230-21377570 32 0.55
06_02_0143 - 12266120-12267083,12267950-12268290 32 0.55
06_02_0141 + 12259098-12259438,12260305-12261268 32 0.55
02_04_0118 + 19924184-19924524,19925391-19926354 32 0.55
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121... 31 1.3
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.3
01_01_0070 - 542603-542686,542803-543441 29 5.1
06_03_1310 + 29238644-29240260 29 6.8
05_04_0035 + 17378541-17381276 29 6.8
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 29 6.8
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 29 6.8
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 28 9.0
>11_03_0188 - 11338013-11338976,11339843-11340183
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>09_02_0615 - 11251869-11252832,11253699-11254039
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 32.3 bits (70), Expect = 0.55
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 722 PPVRSPXSXPXPXPDTLSNFPPFGXAWGPPHXXXXXVSPFPX*VXPXXLGFXPQXP 889
PP SP P P P L + PP A P + P P P LG+ P P
Sbjct: 1172 PPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSPSSLGYQPPAP 1227
>06_03_0490 - 21375400-21376363,21377230-21377570
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>06_02_0143 - 12266120-12267083,12267950-12268290
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>06_02_0141 + 12259098-12259438,12260305-12261268
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>02_04_0118 + 19924184-19924524,19925391-19926354
Length = 434
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 698 QXVSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWG--PPH 814
Q +P +P V +P S P T+ +PP G WG PP+
Sbjct: 60 QPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPN 100
>03_03_0053 +
14109636-14109948,14110075-14110302,14112030-14112181,
14112305-14112578,14112687-14112739
Length = 339
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 604 AFFHRLRP--PGXASQ-KSTLKSXVEKPXRTXXIPGRFPLXSPPGALSXFXT-LPPXGYP 771
+F + ++P P S+ ++ +K ++ +T +PG FP+ PG L F L P Y
Sbjct: 210 SFINEIKPLVPKVISKIENAIKVLIDLGAKTIIVPGNFPIGCVPGYLGIFPNKLSPKDYD 269
Query: 772 V 774
V
Sbjct: 270 V 270
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 625 PPGXASQKSTLKSXVEKPXRTXXIPGRFPLXSPPGALSXFXTLPPXGY 768
P AS ST++ + RT IPG FP P LS + + P Y
Sbjct: 199 PDVVASISSTVQELIGLGARTIMIPGNFPTGCVPAYLSAYRSGNPADY 246
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/65 (33%), Positives = 25/65 (38%)
Frame = +2
Query: 704 VSPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWGPPHXXXXXVSPFPX*VXPXXLGFXPQ 883
V+P KAPPV + P P T PP PP V+P P V P P
Sbjct: 65 VAPAKAPPVAPAVAPVTPPPPTPKKAPP--PPVTPPPVTPPPVTPPP--VSPPPATPPPA 120
Query: 884 XPXQT 898
P T
Sbjct: 121 LPPST 125
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 680 TGLXXYQXVSPXKAPPVRSPXSXPXPXPDTLSNFPP 787
T L ++ P PP R+P + P P T S+ PP
Sbjct: 376 TPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP 411
>05_04_0035 + 17378541-17381276
Length = 911
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/71 (23%), Positives = 25/71 (35%)
Frame = +2
Query: 572 RPXTXKRPRXWRFSIGSAPLDXHHKNRRSSXRWKNPTGLXXYQXVSPXKAPPVRSPXSXP 751
+P P W+ S A HH S W+ G+ Q PP++ P
Sbjct: 674 QPPNVSTPNTWQHSGVHATQGTHH-GMGSPRPWQQSVGIGQVQQTDYSSGPPMQPGFGHP 732
Query: 752 XPXPDTLSNFP 784
P P + + P
Sbjct: 733 QP-PQPMHSAP 742
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -2
Query: 479 PPXRTTEXRESVGGEAEERPXXKPPLPXRWPIXLCKXKXXTPPPXP 342
PP T + G R +PPLP P L TPPP P
Sbjct: 445 PPLPTVAAAAAAGMPPRRRRRVRPPLPPSPP--LLSSTTATPPPTP 488
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 650 RRSSXRWKNPTGLXXYQXVSPXKAPPVRSPXSXPXP 757
R RW P+ + VSP K P SP P P
Sbjct: 328 RSLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLP 363
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 605 RFSIGSAPLDXHHKNRRSSXRWKNP 679
RFS SAP+D H + RR +NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,274
Number of Sequences: 37544
Number of extensions: 244911
Number of successful extensions: 955
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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